Click here to switch to the map view.

The map label for this gene is yhdU [H]

Identifier: 16766682

GI number: 16766682

Start: 3557611

End: 3557775

Strand: Direct

Name: yhdU [H]

Synonym: STM3387

Alternate gene names: 16766682

Gene position: 3557611-3557775 (Clockwise)

Preceding gene: 16766681

Following gene: 16766683

Centisome position: 73.24

GC content: 41.82

Gene sequence:

>165_bases
ATGATACGTAAGTATTGGTGGCTGGTTGTTTTTGCCGTCTCCGTTTTTCTTTTTGATGCGCTTTTGATGCAATGGATCGA
ATTGATGGCAACTGAACAGGATAAGTGCCGAAACATGGATTCGGTTAACCCTCTCAAATTGATCAATTGTACCGATCTGG
AGTAG

Upstream 100 bases:

>100_bases
CTATCTTCAGAGAAGTAAAAGCATTGTAAGTCCGCTTTTCAGCGTCAAAATTTCATGTATATTCCCAGCACGCATGGGCA
TGAATACACAGGATTTGACG

Downstream 100 bases:

>100_bases
CGAACCGGGCGATTTAACCTATGATTATTTATCACCCGGATTTCTTTTATCCCTTATAAAAACAGGGAATTAAAACACGT
TGAGGATAAAAGAAGGGGTG

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 54; Mature: 54

Protein sequence:

>54_residues
MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNPLKLINCTDLE

Sequences:

>Translated_54_residues
MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNPLKLINCTDLE
>Mature_54_residues
MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNPLKLINCTDLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789663, Length=53, Percent_Identity=84.9056603773585, Blast_Score=76, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022540
- ProDom:   PD052549 [H]

Pfam domain/function: PF10831 DUF2556 [H]

EC number: NA

Molecular weight: Translated: 6483; Mature: 6483

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
11.1 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
7.4 %Met     (Mature Protein)
11.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNPLKLINCTDLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNPLKLINCTDLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]