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The map label for this gene is yciR [C]

Identifier: 16766683

GI number: 16766683

Start: 3557926

End: 3560025

Strand: Direct

Name: yciR [C]

Synonym: STM3388

Alternate gene names: 16766683

Gene position: 3557926-3560025 (Clockwise)

Preceding gene: 16766682

Following gene: 16766685

Centisome position: 73.25

GC content: 54.19

Gene sequence:

>2100_bases
ATGCCGGTTAGTGAGTACAACCACATCCTTGTGGCGGTTTCATTTGCTGTCGCTATTTTTGCGTCCTATACCGCATTAAA
TATGGCCGGACGCGTAGCCGGAAGCGCCCGATCAAACGCCAGAATATGGCTAATGGGCGGCGGCTTCGCGCTGGGCGTCG
GTATTTGGGCGATGCATTTTGTCGGGATGCTGGCGATGGATCACGCGATGAACATGCGCTTCGATCCGTTCCTCACCGGC
CTCTCCATGCTGATCGCGATCGGCTCCTCCCTGTTTGCGCTATGGCTGGTCAGCGCTGAAAAACTGCGCCTGCGCCGTTT
ACTGCCGGGCGCGCTGGTGATGGGACTGGGCATCAGCGCAATGCATTATACCGGGATGGCGGCGCTGCAATTTGCTTCCA
TTATCGTCTGGAATAGCGCGTGGGTTGCCCTCTCTATCATTATCGCGCTACTGGCGTCCTGCGGCGCGCTGTGGCTCACG
TTCCGCCTGCGTCATGAGGGAACAGATGTCGCCCTGAGGCGAGCAGGCGCCGCGGTATTAATGGGGATAGCTATCGCCGG
CATGCATTACGCCGGCATGAAGGCCGCACACTTTCCCCAAAACTGGCCGATGGAGCATCGTGGCGTCGATAGCAACTGGC
TGGCTGTTCTTGTCAGCGTGGTCGCGCTGACTATCCTGGGTATTACTCTGCTGGTTTCTTTATTTGACGCCCGGCTTCAG
GCCCGTACCGCACTACTTGCCTCTTCGCTGGCGCAGGCGAACCAGGAACTGGCGCAGTTGGCGCTGCATGATACGCTCAC
CCGTTTACCAAACCGGGTGCTTCTTGAGGATCGTCTGGAACAGGCCATCAGCAAAGCGAATCGGGAAAACACGTCTTTCG
CGCTACTGTTTATGGATCTGGATGGCTTTAAAACCGTTAATGACGCTTATGGTCATGATATCGGCGATAAGCTACTGGTA
GCGGTCACGCATCGTCTGAACCAACCGCTGAGCGGGCAGTTTACCCTGGCGCGGATTGGCGGCGACGAATTTGTGCTGCT
TGCAGAAGTCAGCGCGCCTGACGAAGCGGCTTCCCTTGCCAGCGCGCTGGTACATTCGATAGATGCGCCCTTTACAATAG
ATCCGTACGAACTGGTCGTCACCCTTAGCGTGGGAATAGCGCTCTATCCGCTGGACGGAAAAAACGAACGGGAACTGATG
TTCAACGCCGATGCCGCAATGTACCACACGAAACATACGGGGCGTAACGGATACCATTTCTTTCAGCCATCAATGAATAT
GCTGGCGCAAACCCAACTTCAGCTAATGAATGACCTGTGGCTGGCGCTGGAAAGACAAGAGCTCAGGCTAGTGTATCAGC
CTAAATTTCAGGCTCCTGCCGGCCCTATTGTAGGATTTGAGGCCCTGTTGCGCTGGTATCATCCAAAACAAGGCGTACTG
AATCCTGACCAGTTTTTACCGCTGGCGGAAAAAACGGGTCTTATCGTCACTATCGGTAGCTGGGTGATAGACGAGGCGTG
TCGACAGCTCCGCGAGTGGCACTTACAGGGATACGACTTATGGTCAGTGGCGGTAAATCTGTCCGCCTTACAATTTGAGC
AGCCCGGGCTTGTGGACACCATTACGCGGAGCCTGGCCCGACACAGTATCCGTCCCGATTTATTGATTCTGGAAATCACC
GAAACCACGGCGATGAACAAGCCAGAGCAAAGCGTCGCTATACTCACCAGATTAACGGAAATGGGGGTTAAGGCCTCTAT
TGACGACTTTGGCACCGGTTATTCCAGCCTTCTCTATCTGAAACGTCTTCCGGCGTGCGAACTAAAAATTGATCGCGCTT
TCGTACATGAACTCAGCGAGGCAGGCGACGGCGCGACCATTGTTGCGGCTATTGTCGCGCTGGCGAAAGCGTTAAATCTG
CAAATTGTGGCAGAAGGGGTAGAGAATGAAACGCAGCAACAATTTTTGACCCAGTTAGGATGCCATACGCTTCAGGGGTT
CCTGCTTGGCAAGCCGCGTACGGCAGAGGAAATTGCTCGCGATATTCGGGATCCTGCCAATATATTCACAAGGTCAATAT
ATAATATCAACTCAAAATAA

Upstream 100 bases:

>100_bases
CCCTTATAAAAACAGGGAATTAAAACACGTTGAGGATAAAAGAAGGGGTGATACTGTCTCGTCCTGTTCTTTTCCTGCAT
AACCAATGAGCTAATGATAC

Downstream 100 bases:

>100_bases
TCTCAGGCTTCTTCCGCCTGTTGTTCATTTGGCATTAATTGCCTCACACTGCCATCCGGGCTTAGCATTTTTAATACATT
ATCGACTAATGCAGGCGCCT

Product: signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 699; Mature: 698

Protein sequence:

>699_residues
MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWAMHFVGMLAMDHAMNMRFDPFLTG
LSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLT
FRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLV
AVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELM
FNADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYDLWSVAVNLSALQFEQPGLVDTITRSLARHSIRPDLLILEIT
ETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACELKIDRAFVHELSEAGDGATIVAAIVALAKALNL
QIVAEGVENETQQQFLTQLGCHTLQGFLLGKPRTAEEIARDIRDPANIFTRSIYNINSK

Sequences:

>Translated_699_residues
MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWAMHFVGMLAMDHAMNMRFDPFLTG
LSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLT
FRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLV
AVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELM
FNADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYDLWSVAVNLSALQFEQPGLVDTITRSLARHSIRPDLLILEIT
ETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACELKIDRAFVHELSEAGDGATIVAAIVALAKALNL
QIVAEGVENETQQQFLTQLGCHTLQGFLLGKPRTAEEIARDIRDPANIFTRSIYNINSK
>Mature_698_residues
PVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWAMHFVGMLAMDHAMNMRFDPFLTGL
SMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLTF
RLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQA
RTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVA
VTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELMF
NADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLN
PDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYDLWSVAVNLSALQFEQPGLVDTITRSLARHSIRPDLLILEITE
TTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACELKIDRAFVHELSEAGDGATIVAAIVALAKALNLQ
IVAEGVENETQQQFLTQLGCHTLQGFLLGKPRTAEEIARDIRDPANIFTRSIYNINSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=38.2075471698113, Blast_Score=284, Evalue=1e-77,
Organism=Escherichia coli, GI87081921, Length=442, Percent_Identity=36.4253393665158, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=34.5070422535211, Blast_Score=225, Evalue=9e-60,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=36.0655737704918, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=36.1702127659575, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=34.7107438016529, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=34.0248962655602, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=33.8912133891213, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1788849, Length=457, Percent_Identity=27.1334792122538, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1787055, Length=393, Percent_Identity=26.4631043256997, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI87082096, Length=419, Percent_Identity=29.5942720763723, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=31.1740890688259, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=34.3023255813954, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=34.5454545454545, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=33.5135135135135, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787802, Length=220, Percent_Identity=28.1818181818182, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=32.3170731707317, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=29.8780487804878, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=31.1377245508982, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=31.0975609756098, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=28.9308176100629, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=27.683615819209, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=24.3421052631579, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789650, Length=409, Percent_Identity=20.5378973105134, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 76703; Mature: 76572

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWAMHF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHH
VGMLAMDHAMNMRFDPFLTGLSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHH
MHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLTFRLRHEGTDVALRRAGAAVL
HHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCHHEEHEEEEECCCCHHHHHHHHHHHH
MGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRENTSFALLFMDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
DGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLA
CCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHH
SALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHF
HHHHHHCCCCCEECHHHEEEEEECCEEEEECCCCCCCEEEEECCHHHEEECCCCCCCCEE
FQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
ECCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYDLWSVAVNLSALQFEQPGLVDT
CHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHEEECCCCHHHH
ITRSLARHSIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYL
HHHHHHHHCCCCCEEEEEEECHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHH
KRLPACELKIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLG
HHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
CHTLQGFLLGKPRTAEEIARDIRDPANIFTRSIYNINSK
HHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWLMGGGFALGVGIWAMHF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHH
VGMLAMDHAMNMRFDPFLTGLSMLIAIGSSLFALWLVSAEKLRLRRLLPGALVMGLGISA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHH
MHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLTFRLRHEGTDVALRRAGAAVL
HHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCHHEEHEEEEECCCCHHHHHHHHHHHH
MGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLVSVVALTILGITLLVSLFDARLQ
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTALLASSLAQANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANRENTSFALLFMDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
DGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFVLLAEVSAPDEAASLA
CCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHHHHHHH
SALVHSIDAPFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHF
HHHHHHCCCCCEECHHHEEEEEECCEEEEECCCCCCCEEEEECCHHHEEECCCCCCCCEE
FQPSMNMLAQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVL
ECCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCC
NPDQFLPLAEKTGLIVTIGSWVIDEACRQLREWHLQGYDLWSVAVNLSALQFEQPGLVDT
CHHHCCCCHHHCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHEEHHHEEECCCCHHHH
ITRSLARHSIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYL
HHHHHHHHCCCCCEEEEEEECHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHH
KRLPACELKIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLG
HHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
CHTLQGFLLGKPRTAEEIARDIRDPANIFTRSIYNINSK
HHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]