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The map label for this gene is ydfH [C]

Identifier: 16766652

GI number: 16766652

Start: 3525275

End: 3525940

Strand: Reverse

Name: ydfH [C]

Synonym: STM3357

Alternate gene names: 16766652

Gene position: 3525940-3525275 (Counterclockwise)

Preceding gene: 16766653

Following gene: 16766651

Centisome position: 72.59

GC content: 49.7

Gene sequence:

>666_bases
GTGCAGAAGCCTAAGTTAGGGAAGATTAAGCTTCTTTCAGCGAAAGAACAGGTCGCGGCAGTGCTGCGTAAAGCGATTCT
TTCGAGGGAGTTAGTGGAAGGGCAGGAGATTACGTTAGAAGGCATTGCCGGAATGGTCGGCGTGTCCAGTATGCCAGTGC
GCGAGGCGTTTCAGATTCTGGCGGCGGATGGGCTGATAAAAGTGCGCCCTAATAAAGGGGCGGTGGTGTTGGGCATCAAT
GAACAAACGATCCGTGAACACTATGAAATTCGCGCGCTGTTAGAAAGTGAGGCGGTGGCTAAAGCTTCTCGTCCTGGCTC
CGATATCTCGCGGATAGCCCAGGTGCATTATGCCGCTGAAAAGGCTCTCGCGGAAAATAACTCGGCGGAATACTCCGACC
TGAATCAGGCATTTCATATGGAAATATGGAATGTTGCTGGCAACGAAAAAATGAAAATGTTGCTCTGTAATATGTGGAAC
GGCCTGTCGATGGGCCATAAGGTCACCGAAGAAGAGTATGCCGTGATTTCCATTCAGGAACATAAAAGTATTCTGCAAGC
TCTTGAACTTCATGATGAAACATTGGCACGCCAGCGCATGCGCGAACACATTATTCGCTCAATGGAGAATATGCTGACCC
GCTATGTTGGTGACCCTTCTGCCTGA

Upstream 100 bases:

>100_bases
GTCATACGCCAGGGGCGGCGTGATGAGATTGGGCAAGTTATGCAGCGTTATTTCCTCTCTTTAGCAGAAATAATGCGTCA
ACATATGAAGGATTGGGAAA

Downstream 100 bases:

>100_bases
TCTTTTCGCCTGCGTGAGCATCGCAGGCGCTTCAACCAATTCTTCAATTCTATTAATCACGTCCAGTAACGATCTAACCA
CGATCTTGATGTAGATCCCA

Product: regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; GntR Family Regulatory Protein; GntR Domain-Containing Protein; Transcriptional Regulator MdcY Family Protein; GntR Domain Protein; Transcription Regulator; GntR-Family Regulatory Protein; Regulatory Protein; Transcriptional Regulator Gntr Family; Transcription Regulator Protein; FCD Domain Protein; GntR Family Regulator; Transcriptional Regulator GntR-Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator GntR; Regulatory Protein GntR Family; Regulatory Protein GntR; Regulatory Protein GntR HTH; GntR-Family Protein Transcriptional Regulator

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
EQTIREHYEIRALLESEAVAKASRPGSDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA

Sequences:

>Translated_221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
EQTIREHYEIRALLESEAVAKASRPGSDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA
>Mature_221_residues
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGIN
EQTIREHYEIRALLESEAVAKASRPGSDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN
GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24645; Mature: 24645

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQIL
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHH
AADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVAKASRPGSDISRIAQVHYAAE
HHCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQE
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHH
HKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSSMPVREAFQIL
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHH
AADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVAKASRPGSDISRIAQVHYAAE
HHCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIQE
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHH
HKSILQALELHDETLARQRMREHIIRSMENMLTRYVGDPSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA