Click here to switch to the map view.

The map label for this gene is yfbS [C]

Identifier: 16766651

GI number: 16766651

Start: 3523796

End: 3525064

Strand: Reverse

Name: yfbS [C]

Synonym: STM3356

Alternate gene names: 16766651

Gene position: 3525064-3523796 (Counterclockwise)

Preceding gene: 16766652

Following gene: 16766650

Centisome position: 72.57

GC content: 53.11

Gene sequence:

>1269_bases
ATGGAACCCATTACCCTTACCTTATGTTTATTGGTGTTCGCTATCGTCATGTTTGTATGGGAAAAAGTGCCACTGGCCGT
CACTTCCATGATTGTCTGCGTGGCCTTAGTTATCACCGGCGTTCTGAATATCAAACAGGCCTTTGCTGGCTTTATCGACA
CTAACGTCATCCTCTTTGTCGCGATGTTTATCGTGGGCGGTGCGTTGTTCGAGACCGGTATGGCAAACAAAGTGGGCGGC
GTCATCACGCGCTTCGCGAAAACAGAAAAACAGCTGATCTTCACCATTATGGTGGTGGTGGGTTTGATGTCTGGCGTCCT
CTCTAACACCGGTACCGCTGCGGTTTTGATTCCGGTGGTGATCGGCGTGGCGGCAAAATCGGGCTTCTCGCGTTCTCGTC
TACTGATGCCGCTGGTTTTTGCCGCTGCGTTGGGCGGTAACCTGTCGTTAATTGGCGCGCCGGGAAATCTTATCGCGCAG
TCTGCGCTACAGAATATTGGCGGCGGCTTTGGCTTTTTTGAATACGCAAAAATCGGTCTCCCGATGCTCATCTGCGGCAT
TCTCTACTTCCTGACTATTGGCTATCGCTTTCTGCCGAATAATGCGACCGGCGGTGAGGTGGGGAGCGTCGGGGTGCAAC
GTGACTACAGCCATGTTCCACAGTGGAAACAACGGCTCTCACTCGTGGTGTTGATCGCAACGATCCTCGGCATGATCTTT
GAGAAGAAGATCGGTGTCAGCCTGGCCGTGACCGGTTGTATTGGCGCTCTTGTGCTGGTAGTAAGCGGCGTACTCACGGA
AAAACAGGCCTATAAAGCTATTGATTCACAGACTATTTTTATCTTTGGCGGCACCCTGGCGCTGGCAAAAGCGCTGGAAA
TGACCGGGGCAGGCAAGCTGGTTGCGGACTATGTAATCGGCATGCTGGGGCAAAACTCCTCACCGTTCATGTTGCTGATC
GCCGTTTTCGCCTTATCCGTTGTGATGACCAACTTTATGTCCAATACCGCAACGACAGCGCTATTGGTGCCGGTGAGTTT
GTCCATTGCCGCAGGCATGGGGGCCGACCCGCGTGCGGTTCTGATGGCGACGGTCATTGGCGGTTCCTGCGCCTACGCAA
CCCCTATCGGTATGCCTGCCAACATGATGGTGCTCTCCGCGGGTGGCTATAAATTTGTCGACTACGCTAAGGCCGGTATC
CCCCTGATTATCGTTTCAACCATTGTCAGCTTGATCCTGCTGCCAATCCTTTTCCCTTTTCATCCGTAA

Upstream 100 bases:

>100_bases
TTTCCTGAGAAACGATTTGACTTAGTTTTTGTATGGGAATAATTTCTCCCTGCCAACATTGGATACAATATCATATATCA
TTGATTGGATAATTATAAAT

Downstream 100 bases:

>100_bases
TTAACGGAAGCTGTTCTGACTAAGGAGCATTTATGAGCAAAAGTGAACAGATATCCCATATGACCGACGTTATGGCCAAG
TTTGTGGGATATACCGGCAA

Product: cation transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MEPITLTLCLLVFAIVMFVWEKVPLAVTSMIVCVALVITGVLNIKQAFAGFIDTNVILFVAMFIVGGALFETGMANKVGG
VITRFAKTEKQLIFTIMVVVGLMSGVLSNTGTAAVLIPVVIGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQ
SALQNIGGGFGFFEYAKIGLPMLICGILYFLTIGYRFLPNNATGGEVGSVGVQRDYSHVPQWKQRLSLVVLIATILGMIF
EKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDSQTIFIFGGTLALAKALEMTGAGKLVADYVIGMLGQNSSPFMLLI
AVFALSVVMTNFMSNTATTALLVPVSLSIAAGMGADPRAVLMATVIGGSCAYATPIGMPANMMVLSAGGYKFVDYAKAGI
PLIIVSTIVSLILLPILFPFHP

Sequences:

>Translated_422_residues
MEPITLTLCLLVFAIVMFVWEKVPLAVTSMIVCVALVITGVLNIKQAFAGFIDTNVILFVAMFIVGGALFETGMANKVGG
VITRFAKTEKQLIFTIMVVVGLMSGVLSNTGTAAVLIPVVIGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQ
SALQNIGGGFGFFEYAKIGLPMLICGILYFLTIGYRFLPNNATGGEVGSVGVQRDYSHVPQWKQRLSLVVLIATILGMIF
EKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDSQTIFIFGGTLALAKALEMTGAGKLVADYVIGMLGQNSSPFMLLI
AVFALSVVMTNFMSNTATTALLVPVSLSIAAGMGADPRAVLMATVIGGSCAYATPIGMPANMMVLSAGGYKFVDYAKAGI
PLIIVSTIVSLILLPILFPFHP
>Mature_422_residues
MEPITLTLCLLVFAIVMFVWEKVPLAVTSMIVCVALVITGVLNIKQAFAGFIDTNVILFVAMFIVGGALFETGMANKVGG
VITRFAKTEKQLIFTIMVVVGLMSGVLSNTGTAAVLIPVVIGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQ
SALQNIGGGFGFFEYAKIGLPMLICGILYFLTIGYRFLPNNATGGEVGSVGVQRDYSHVPQWKQRLSLVVLIATILGMIF
EKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDSQTIFIFGGTLALAKALEMTGAGKLVADYVIGMLGQNSSPFMLLI
AVFALSVVMTNFMSNTATTALLVPVSLSIAAGMGADPRAVLMATVIGGSCAYATPIGMPANMMVLSAGGYKFVDYAKAGI
PLIIVSTIVSLILLPILFPFHP

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=203, Percent_Identity=36.9458128078818, Blast_Score=122, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI71988385, Length=452, Percent_Identity=23.4513274336283, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI32565804, Length=438, Percent_Identity=23.5159817351598, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551790, Length=479, Percent_Identity=20.4592901878914, Blast_Score=78, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6322263, Length=397, Percent_Identity=24.4332493702771, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898 [H]

Pfam domain/function: PF00939 Na_sulph_symp [H]

EC number: NA

Molecular weight: Translated: 44034; Mature: 44034

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CC
>Mature Secondary Structure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CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]