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The map label for this gene is aer [H]

Identifier: 16766516

GI number: 16766516

Start: 3382755

End: 3384275

Strand: Reverse

Name: aer [H]

Synonym: STM3217

Alternate gene names: 16766516

Gene position: 3384275-3382755 (Counterclockwise)

Preceding gene: 16766519

Following gene: 16766515

Centisome position: 69.67

GC content: 55.16

Gene sequence:

>1521_bases
ATGTCTTCTCATCCCTACGTCAGCCAGCTAAATACCCCGCTGGATGATGATACCACTCTGATGTCTACGACCGACCTGGA
AAGCTATATCACTCACGCCAATGACACTTTTGTCCAAGTGAGCGGCTATCAGTTAAACGAGTTACTGGCGCAGCCACATA
ATCTGGTGCGTCATCCGGATATGCCGAAAGCTGCCTTCGCAGATATGTGGTACACCCTAAAACAGGGCGAACCGTGGAGC
GGCATTGTGAAAAACCGGCGTAAAAACGGCGACCATTATTGGGTGCGGGCCAACGCGGTACCGATGATACGTGAAGGGCG
TGTGACTGGATATATGTCGATCCGTACCCGCGCCACGGATGATGAGGTTGCCGCCGTCGAGCCTTTATATCAGGCGCTAA
ATGAAGGGCGGTGTAGTAAACGAATTCATAAAGGCCTGGTGGTTCGTCAGGGTTTGCTGGGCAAACTGCCCGCTATGCCT
GTTCGCTGGCGAGTGCGTAGCATTATGGGGCTAATGGCCGTAATGCTGGCGTTGGCGTTGTTCGGTACGGATGCCTCATG
GCAGGCGTTGCTGTTGGGCGCGTTGGCGATGCTGGCAGGTACGGCGCTATTGGAATGGCAAATTGTGCGTCCCATTGAAA
ATGTGGCGACGCAGGCGCTGAAAGTGGCGACCGGCGAACGCAACAGCGTACAACATCTTAATCGTAGCGATGAGTTGGGG
CTGACGCTGAGGGCCGTGGGGCAGCTTGGCTTGATGTGCCGCTGGCTGATCAATGACGTATCAAGTCAGGTTTCCAGCGT
CAGAAACGGCAGTGAAAGGCTGGCGAAGGGTAATAATGATCTGAACGAACACACCCGTCAGACCGTGGAGAATGTTCAGG
AAACGGTAACGACCATGAACCAGATGGCGGAGTCCGTGAAGCTCAATTCCGAGACGGCTTCCGCTGCGGATAAGCTTTCC
ATGGCGGCCAGTAGCGCGGCGACTCAGGGAGGTGAGGCGATGGATACGGTGATTAAAACGATGGATGATATCGCTCACAG
TACGCAACGTATCGGGACGATCACCACGCTAATTAACGATATCGCTTTTCAGACGAATATCCTGGCGCTGAATGCGGCGG
TAGAAGCGGCGAGAGCGGGCGAGCAGGGGAAAGGGTTTGCCGTGGTTGCTGGCGAGGTACGCCATCTTGCCAGCCGCAGC
GCTAATGCGGCGAACGATATTCGTAAATTAATTGATGCCAGCGCAACAAAGGTGCAGTCAGGCTCCGAGCAGGTTCACGC
CGCAGGCCGTACCATGGATGACATTGTAGCTCAGGTGCAAAATGTCACCCTGCTTATCGCACGTATCAGTCAGTCGACGC
AGGAACAGACAGATGGGCTTTCCAGCCTGACCCGCGCCGTGGACGAGTTGAACCGCATAACCCAGAAAAATGCGGCGCTG
GTGGAAGAGAGCGCACAAGTCTCCGCAATGGTAAAACACCGTGCCAGCCGGCTGGAGGATGCGGTCACGGTACTGCATTA
A

Upstream 100 bases:

>100_bases
CGATCCAGAGCAATTTTAACAACTAAAGATAAATAGATTAGCGCCGAAATAACATCTGAGCGAAAAATTAACATCCAGAT
AACCTGCACAGGACGCTATC

Downstream 100 bases:

>100_bases
GTTTATTTGTAGGTAGCAATGGTAATGACATCCGCCCGGTAGCAACAGGCTTACCGGGCGGATGCGCTCTGATAGAAGGC
GGTGCCTGCCATCATAGAGA

Product: aerotaxis sensor receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MSSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQLNELLAQPHNLVRHPDMPKAAFADMWYTLKQGEPWS
GIVKNRRKNGDHYWVRANAVPMIREGRVTGYMSIRTRATDDEVAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMP
VRWRVRSIMGLMAVMLALALFGTDASWQALLLGALAMLAGTALLEWQIVRPIENVATQALKVATGERNSVQHLNRSDELG
LTLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAKGNNDLNEHTRQTVENVQETVTTMNQMAESVKLNSETASAADKLS
MAASSAATQGGEAMDTVIKTMDDIAHSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRS
ANAANDIRKLIDASATKVQSGSEQVHAAGRTMDDIVAQVQNVTLLIARISQSTQEQTDGLSSLTRAVDELNRITQKNAAL
VEESAQVSAMVKHRASRLEDAVTVLH

Sequences:

>Translated_506_residues
MSSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQLNELLAQPHNLVRHPDMPKAAFADMWYTLKQGEPWS
GIVKNRRKNGDHYWVRANAVPMIREGRVTGYMSIRTRATDDEVAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMP
VRWRVRSIMGLMAVMLALALFGTDASWQALLLGALAMLAGTALLEWQIVRPIENVATQALKVATGERNSVQHLNRSDELG
LTLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAKGNNDLNEHTRQTVENVQETVTTMNQMAESVKLNSETASAADKLS
MAASSAATQGGEAMDTVIKTMDDIAHSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRS
ANAANDIRKLIDASATKVQSGSEQVHAAGRTMDDIVAQVQNVTLLIARISQSTQEQTDGLSSLTRAVDELNRITQKNAAL
VEESAQVSAMVKHRASRLEDAVTVLH
>Mature_505_residues
SSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQLNELLAQPHNLVRHPDMPKAAFADMWYTLKQGEPWSG
IVKNRRKNGDHYWVRANAVPMIREGRVTGYMSIRTRATDDEVAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMPV
RWRVRSIMGLMAVMLALALFGTDASWQALLLGALAMLAGTALLEWQIVRPIENVATQALKVATGERNSVQHLNRSDELGL
TLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAKGNNDLNEHTRQTVENVQETVTTMNQMAESVKLNSETASAADKLSM
AASSAATQGGEAMDTVIKTMDDIAHSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSA
NAANDIRKLIDASATKVQSGSEQVHAAGRTMDDIVAQVQNVTLLIARISQSTQEQTDGLSSLTRAVDELNRITQKNAALV
EESAQVSAMVKHRASRLEDAVTVLH

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=506, Percent_Identity=83.596837944664, Blast_Score=868, Evalue=0.0,
Organism=Escherichia coli, GI1787690, Length=317, Percent_Identity=38.801261829653, Blast_Score=215, Evalue=7e-57,
Organism=Escherichia coli, GI2367378, Length=345, Percent_Identity=42.8985507246377, Blast_Score=211, Evalue=9e-56,
Organism=Escherichia coli, GI1788195, Length=298, Percent_Identity=41.2751677852349, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1788194, Length=249, Percent_Identity=45.3815261044177, Blast_Score=199, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 55064; Mature: 54933

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQLNELLAQPHNLVRHPD
CCCCCCHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEECCCHHHHHHHCCHHHHCCCC
MPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAVPMIREGRVTGYMSIRTRATD
CCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCEEECCCEEEEEEEEECCCC
DEVAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMPVRWRVRSIMGLMAVMLALAL
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
FGTDASWQALLLGALAMLAGTALLEWQIVRPIENVATQALKVATGERNSVQHLNRSDELG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
LTLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAKGNNDLNEHTRQTVENVQETVTTMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
QMAESVKLNSETASAADKLSMAASSAATQGGEAMDTVIKTMDDIAHSTQRIGTITTLIND
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLIDASATKVQS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
GSEQVHAAGRTMDDIVAQVQNVTLLIARISQSTQEQTDGLSSLTRAVDELNRITQKNAAL
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEESAQVSAMVKHRASRLEDAVTVLH
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQLNELLAQPHNLVRHPD
CCCCCHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEECCCHHHHHHHCCHHHHCCCC
MPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAVPMIREGRVTGYMSIRTRATD
CCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECCCCEEECCCEEEEEEEEECCCC
DEVAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMPVRWRVRSIMGLMAVMLALAL
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
FGTDASWQALLLGALAMLAGTALLEWQIVRPIENVATQALKVATGERNSVQHLNRSDELG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
LTLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAKGNNDLNEHTRQTVENVQETVTTMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
QMAESVKLNSETASAADKLSMAASSAATQGGEAMDTVIKTMDDIAHSTQRIGTITTLIND
HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLIDASATKVQS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
GSEQVHAAGRTMDDIVAQVQNVTLLIARISQSTQEQTDGLSSLTRAVDELNRITQKNAAL
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEESAQVSAMVKHRASRLEDAVTVLH
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]