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The map label for this gene is ygdR [H]

Identifier: 16766309

GI number: 16766309

Start: 3165141

End: 3165359

Strand: Direct

Name: ygdR [H]

Synonym: STM3007

Alternate gene names: 16766309

Gene position: 3165141-3165359 (Clockwise)

Preceding gene: 16766308

Following gene: 16766310

Centisome position: 65.16

GC content: 47.03

Gene sequence:

>219_bases
ATGAAAAAGTGGGCAGTTGTAATTTCCGCAGTAGGGTTGGCTTTTGCGGTATCCGGATGCAGCAGCGATTATGTAATGGC
GACGAAAGATGGTCGTATGATCCTGACCGATGGAAAACCACAAGTTGACGATGATACCGGTCTGGTCAGCTATACCGATG
CACAGGGAAACGAGATGCAAATCAACCGTGACGAAGTATCCCAAATCATCGAACGTTAA

Upstream 100 bases:

>100_bases
TGCTGCTTCCGACATGCAGAGCTGCGCGTTATTACTAGACTATTATCAGACATATGATTAACAGACTATTATCAGATGCA
GGCTATGTGAGGACAAACGG

Downstream 100 bases:

>100_bases
GCGGTGGCCTGTGATCGAGGTCAGCGTTCTGCAAGCCTTCAGGCTGCGTCCCGTAACGGTGCGTGGCGACCACGCCCGGT
AACAATTACGCCGCGCAGCC

Product: peptide transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDDDTGLVSYTDAQGNEMQINRDEVSQIIER

Sequences:

>Translated_72_residues
MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDDDTGLVSYTDAQGNEMQINRDEVSQIIER
>Mature_72_residues
MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDDDTGLVSYTDAQGNEMQINRDEVSQIIER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdI [H]

Homologues:

Organism=Escherichia coli, GI1789198, Length=72, Percent_Identity=90.2777777777778, Blast_Score=137, Evalue=1e-34,
Organism=Escherichia coli, GI87082162, Length=72, Percent_Identity=59.7222222222222, Blast_Score=94, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 7827; Mature: 7827

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDDDTGLVSYTDAQGNEMQ
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCEEE
INRDEVSQIIER
ECHHHHHHHHCC
>Mature Secondary Structure
MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDDDTGLVSYTDAQGNEMQ
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCEEE
INRDEVSQIIER
ECHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]