Click here to switch to the map view.

The map label for this gene is ygdQ [H]

Identifier: 16766308

GI number: 16766308

Start: 3164258

End: 3164971

Strand: Direct

Name: ygdQ [H]

Synonym: STM3006

Alternate gene names: 16766308

Gene position: 3164258-3164971 (Clockwise)

Preceding gene: 16766307

Following gene: 16766309

Centisome position: 65.14

GC content: 50.42

Gene sequence:

>714_bases
ATGTTATTTGCATGGATAACCGATCCTAATGCCTGGCTGGCGCTCGGTACGCTGACGCTGCTGGAGATTGTACTTGGGAT
CGACAACATTATTTTTCTTTCTCTGGTGGTAGCAAAACTTCCCACGGCGCAACGAAACCACGCACGGCGGCTTGGGTTGG
CGGCGGCGATGGTTATGCGCCTGGCGCTGCTGGCGTCAATCGCCTGGGTCACTCGGCTGACTAATCCGCTGTTTGAGCTT
TTCGGCGAAGCGATTTCCGCCCGTGATCTCATTCTGTTACTGGGCGGGTTATTTTTAATCTGGAAAGCCAGCAAGGAGAT
CCATGAGTCCATCGAAGGCGAAGAAGAAGGGTTAAAAACCCGGGTTTCTTCTTTCCTGGGCGCAATAGTGCAGATTATGC
TGCTGGATATTATTTTCAGCCTTGATTCAGTTATCACAGCGGTTGGCCTCTCCGATCATCTGTTTATTATGATGGCGGCA
GTCGTTATTGCCGTGGGCGTCATGATGTTTGCGGCACGGCCCATCGGCGAGTTTGTCGATCGTCATCCGTCGGTAAAAAT
GCTGGCGCTCTCCTTTCTGATCCTGGTTGGCTTTACCCTGATTCTGGAAAGTTTCGACGTTCACGTTCCGAAAGGTTATA
TCTATTTCGCCATGTTCTTCTCTATCGCAGTAGAGAGCCTGAACCTGTTGCGTAATAAAAAGAATCCGCTGTAA

Upstream 100 bases:

>100_bases
ATTTTACACCGTTCCTGGTTGCGCAAATTCAGCCTGGGCTTTCGCCCGTCACTCGACGGGCCTATAATTACCGCTTCTTT
TTTTGGCAGGACTTTGTTCG

Downstream 100 bases:

>100_bases
TCCTGTCTCGCTCCCCCGCCGGGGAGCGAATACTCACTTTATTTCCTTTCTTCTCACAGATTAAGATTTTGCTGCTTCCG
ACATGCAGAGCTGCGCGTTA

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRNHARRLGLAAAMVMRLALLASIAWVTRLTNPLFEL
FGEAISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
VVIAVGVMMFAARPIGEFVDRHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL

Sequences:

>Translated_237_residues
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRNHARRLGLAAAMVMRLALLASIAWVTRLTNPLFEL
FGEAISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
VVIAVGVMMFAARPIGEFVDRHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL
>Mature_237_residues
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRNHARRLGLAAAMVMRLALLASIAWVTRLTNPLFEL
FGEAISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
VVIAVGVMMFAARPIGEFVDRHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0053 family [H]

Homologues:

Organism=Escherichia coli, GI1789197, Length=237, Percent_Identity=94.9367088607595, Blast_Score=423, Evalue=1e-120,
Organism=Escherichia coli, GI1788119, Length=232, Percent_Identity=48.2758620689655, Blast_Score=227, Evalue=6e-61,
Organism=Escherichia coli, GI87082033, Length=228, Percent_Identity=51.3157894736842, Blast_Score=222, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005496 [H]

Pfam domain/function: PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 26152; Mature: 26152

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRNHARRLGLAAAMVMR
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LALLASIAWVTRLTNPLFELFGEAISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARPIGEFVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRNHARRLGLAAAMVMR
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LALLASIAWVTRLTNPLFELFGEAISARDLILLLGGLFLIWKASKEIHESIEGEEEGLKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARPIGEFVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]