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The map label for this gene is vdcC [H]

Identifier: 16766228

GI number: 16766228

Start: 3063775

End: 3065202

Strand: Direct

Name: vdcC [H]

Synonym: STM2922

Alternate gene names: 16766228

Gene position: 3063775-3065202 (Clockwise)

Preceding gene: 16766227

Following gene: 16766229

Centisome position: 63.07

GC content: 55.53

Gene sequence:

>1428_bases
ATGGCATTTGATGATTTGCGCAGTTTTTTACATGCGCTGGATCAGCAGGGACAACTGCTGAAAATCAGCGAGGAAGTGAA
TGCGGAGCCGGATCTCGCAGCCGCTGCCAACGCAACGGGACGCATCGGCGATGGCGCGCCCGCGCTGTGGTTTGACAATA
TTCGTGGTTTTACCGACGCCCGCGTGGCGATGAATACCATCGGTTCCTGGCAGAACCATGCCATCTCACTGGGTTTGCCG
CCTAACACGCCGGTTAAAAAACAGATCGATGAATTTATTCGCCGCTGGGACAATTTTCCGGTAGCGCCGGAACGGCGGGC
GAATCCGGGCTGGGCGGAAAATACCGTCGACGGCGACGCGATCAACCTGTTTGATATCCTGCCGCTGTTTCGTCTGAACG
ACGGCGACGGCGGATTCTATCTGGATAAAGCCTGTGTGGTATCACGCGATCCGCTCGATCCCGATAACTTCGGCAAGCAG
AATGTCGGCATCTACCGCATGGAAGTTAAAGGCAAGCGTAAGCTGGGTCTGCAACCAGTGCCGATGCATGATATCGCATT
GCACCTGCACAAAGCTGAAGAGCGCGGGGAAGATCTGCCGATTGCGATCACGTTGGGTAACGATCCGATCATTACCCTGA
TGGGCGCAACGCCGCTGAAATACGATCAGTCAGAGTATGAAATGGCAGGCGCGCTGCGTGAAAGCCCCTATCCTATCGCC
ACCGCGCCGCTGACCGGTTTTGATGTGCCGTGGGGATCTGAAGTCATTCTTGAAGGGGTCATCGAAAGCCGTAAACGTGA
AATTGAAGGACCGTTCGGCGAATTTACCGGCCACTATTCCGGCGGTCGCAACATGACCGTGGTGCGTATCGATAAGGTCT
CTTACCGCAGCAAACCCATTTTTGAATCGCTCTATTTGGGTATGCCGTGGACGGAAATCGACTACCTGATGGGGCCGGCG
ACCTGCGTGCCACTGTATCAACAGCTGAAAGCCGAATTTCCGGAAGTGCAGGCGGTAAACGCCATGTACACCCACGGCTT
GCTGGCCATCATCTCGACCAAAAAACGCTACGGCGGCTTTGCCCGTGCGGTGGGCCTGCGAGCGATGACGACGCCGCACG
GTCTGGGATATGTGAAGATGGTGATCATGGTCGATGAAGATGTCGATCCATTCAATCTGCCACAGGTGATGTGGGCGTTG
TCGTCGAAAGTGAATCCGGCAGGCGATCTGGTACAGCTACCGAATATGTCCGTCCTGGAACTGGATCCGGGCTCAAGCCC
GGCGGGGATTACCGACAAGCTGATCATTGACGCCACCACGCCGGTTGCGCCAGATAACCGTGGTCACTATAGCCAGCCGG
TTGTTGATTTACCGGAAACTAAAGCCTGGGCTGAAAAGCTGACCGCCATGCTGGCCAACCGTAAATAA

Upstream 100 bases:

>100_bases
TCGTAGCGCGCGTTCTCGACCAGTTTGGTCTGGAGCATACGCGCACGCGCCGCTGGCAAGGACTGCGACAGACAGCAAAT
TTTTCACAGGAGAATGGATA

Downstream 100 bases:

>100_bases
GGAGTAACCGATGATTTGCCCACGCTGTGCCGATGCACATATTGAACTCATGGCGACTTCGCCGGTAAAAGGAGTCTGGA
CGGTATATCAGTGTCAGCAT

Product: 3-polyprenyl-4-hydroxybenzoate decarboxylase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPA
TCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWAL
SSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK

Sequences:

>Translated_475_residues
MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPA
TCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWAL
SSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK
>Mature_474_residues
AFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPP
NTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQN
VGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIAT
APLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPAT
CVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALS
SKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=496, Percent_Identity=27.6209677419355, Blast_Score=174, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6320748, Length=450, Percent_Identity=25.7777777777778, Blast_Score=97, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 52324; Mature: 52193

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA
CCHHHHHHHHHHHCCCCCEEEEHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCHH
RVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDA
HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPV
CHHHHHCCEEEEECCCCCEEECCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPI
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCC
FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECHHHHCCH
ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE
HHHHCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCEEEE
LDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA
CHHHHHHHHHHHCCCCCEEEEHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCHH
RVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDA
HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPV
CHHHHHCCEEEEECCCCCEEECCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPI
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCC
FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECHHHHCCH
ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE
HHHHCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCEEEE
LDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK
ECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA