Click here to switch to the map view.

The map label for this gene is yohC [H]

Identifier: 16765499

GI number: 16765499

Start: 2266638

End: 2267225

Strand: Reverse

Name: yohC [H]

Synonym: STM2169

Alternate gene names: 16765499

Gene position: 2267225-2266638 (Counterclockwise)

Preceding gene: 16765501

Following gene: 16765498

Centisome position: 46.68

GC content: 54.76

Gene sequence:

>588_bases
ATGAACCATGTATGGGGGCTTTTTTCCCATCCCGATCGGGAAATGCAGGTGATCAAAAGCGAAAACGAAACTGTTTCGCA
TCACTATACGCACCATGTTTTGCTGATGGCGGCGATTCCCGTCGTCTGCGCCTTTATCGGCACGACGCAAATCGGCTGGA
ATTTTGGCGACGGCAACGTGTTACAACTCTCGCTGTTTACCGCTTTTGCGCTGGCGGTCTTGTTCTACGGCGTGATGCTG
GCGGGCGTCGCGGTGATGGGACGCGTCATCTGGTGGATGGCGCGAAACTATCCGCAACGGCCATCGCTTGCGCGCTGTAT
GGTTTTTGCCGGCTATGTCGCGACGCCGCTGTTTTTAAGTGGTCTGGTGGCGCTCTATCCCCTGGTATGGCTATGCGCAC
TGGTCGGCGCTGTCGCGCTTTTTTACACCGGCTATTTGCTGTATTTGGGTATTCCGACTTTCCTTAACATTAATAGAGAG
GAAGGATTAAGCTTCTCCAGTTCGACGCTCGCTATCGGCGTGCTGGTCCTGGAGGTGCTACTGGCGATCACCGTGATCCT
GTGGGGATACGGCTACCGCCTGTTCTGA

Upstream 100 bases:

>100_bases
CGACGTTTTGCCGGAGACTATTTTGCCATTGTTCATAAAATAACCAGAAACTGAATTATACTTGAACATACTGGCATCTG
AGGCAGCAGAAGGGGGCAGT

Downstream 100 bases:

>100_bases
TGAGAAAAAGGGCTGGCGCAAAAGCCAGCAATGCAGCATTTGCTGACGATTCTTCTGTAGCGGCAACGCTGGCGTGCCGC
TATGATGCCACTGCTAGCTT

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCAFIGTTQIGWNFGDGNVLQLSLFTAFALAVLFYGVML
AGVAVMGRVIWWMARNYPQRPSLARCMVFAGYVATPLFLSGLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINRE
EGLSFSSSTLAIGVLVLEVLLAITVILWGYGYRLF

Sequences:

>Translated_195_residues
MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCAFIGTTQIGWNFGDGNVLQLSLFTAFALAVLFYGVML
AGVAVMGRVIWWMARNYPQRPSLARCMVFAGYVATPLFLSGLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINRE
EGLSFSSSTLAIGVLVLEVLLAITVILWGYGYRLF
>Mature_195_residues
MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCAFIGTTQIGWNFGDGNVLQLSLFTAFALAVLFYGVML
AGVAVMGRVIWWMARNYPQRPSLARCMVFAGYVATPLFLSGLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINRE
EGLSFSSSTLAIGVLVLEVLLAITVILWGYGYRLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082055, Length=195, Percent_Identity=91.7948717948718, Blast_Score=345, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006977 [H]

Pfam domain/function: PF04893 Yip1 [H]

EC number: NA

Molecular weight: Translated: 21640; Mature: 21640

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCAFIGTTQIGWNFGDGNV
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCE
LQLSLFTAFALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLARCMVFAGYVATPLFLS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
GLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINREEGLSFSSSTLAIGVLVLEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCHHHCCCCCHHHHHHHHHHHHHH
LAITVILWGYGYRLF
HHHHHHHHHCCHHCC
>Mature Secondary Structure
MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCAFIGTTQIGWNFGDGNV
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCE
LQLSLFTAFALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPSLARCMVFAGYVATPLFLS
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
GLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINREEGLSFSSSTLAIGVLVLEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCHHHCCCCCHHHHHHHHHHHHHH
LAITVILWGYGYRLF
HHHHHHHHHCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]