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The map label for this gene is ykgA [H]

Identifier: 16765014

GI number: 16765014

Start: 1764396

End: 1765253

Strand: Direct

Name: ykgA [H]

Synonym: STM1671

Alternate gene names: 16765014

Gene position: 1764396-1765253 (Clockwise)

Preceding gene: 16765009

Following gene: 16765018

Centisome position: 36.32

GC content: 38.34

Gene sequence:

>858_bases
ATGATGATGAAAAAAGCCATAATAATCTCAGTATTAGAGCAAATAGAAAAAAATCTTGAAGAGAGGATTGATATTGAAAA
GCTGGTTGTTATAACAGGTTATTCGCGAAGGAGTTTGCAGGATTTTTTTAAAGAAAAGTGTGGCGTCTCTATCGGAAAAT
ATATCAGACAACGCAAGTTGAGCAGAAGCGCCACTCTGCTAAAGCTGACCTCTCAGTCGGTCACAGATATCGCGTTCAGA
ATGGGGTTTGATTCAGTGCAGTCCTATAGTCGAGAGTTCAAAAAAACATTTGGCGTCAATCCCAATAACTATCGCAAGGC
TGATTTCTGGGATCTCAGAAACCTACGGCCTCCCTACTGGCTTGACTGTGATGAGCATTATCAGTTCGAAATTTGTCAGC
TTACGTCAAAAGAAATTTTCGGATTTCAAACGTCTCATCAGATCGCAACAAATGACCTTCCTAAAAAAGCGTCGCCTATA
AAATGGAAAATCATTCATGAGACGCTCAGAACGTGGGGCGAAAATGTGTATTGTCTCTCGTCTTTTAAGCCGGATAATAC
CAAAGACCAGGTCATCGCCGTAAGCAGTTTTTTTGGTATGGAACATAATTCCGTCGATGGAGGAAAAATACCCATGTCGA
GGGTAATAAAATGTGGTAAATATGCAAAATTCCATTTTGTTGGTCATAAGGAACAATATCAACAATTTTCCAATACAATA
TATATGTGTATATTACCAAAACTGAATCTTATCAGGAGAGAAGGAGAAGATATTGAATACTTCCATTTGGCATCCGTCCA
AAAGCAACAGAATAATGAATCCATTGTCGATCTTTATTATTACATCCCTGTACTGTAA

Upstream 100 bases:

>100_bases
TTTCTTGTTTTGCCAGAAAAGCTAACAACCCCCCACTGGTTTAATAACACAGTATATCAAACACCTTAAATGTTTATATT
TTCGGCTTCAATAAAGAGGA

Downstream 100 bases:

>100_bases
TGACTTCGTACCATCCACGCATTTCATCTGAAAAGTCTTCTCTTTTCAGAACGGTAATAAAACTCTCAGTATTGATTCTG
GTAAAATAAGTGACTATTAA

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFR
MGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPI
KWKIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTI
YMCILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL

Sequences:

>Translated_285_residues
MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFR
MGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPI
KWKIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTI
YMCILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
>Mature_285_residues
MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFR
MGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPI
KWKIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTI
YMCILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=287, Percent_Identity=29.2682926829268, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI87081928, Length=105, Percent_Identity=41.9047619047619, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=32.6923076923077, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33454; Mature: 33454

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHH
SRSATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYW
HHHHHEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEE
LDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLRTWGENVYCLS
ECCCCCCCEEEEEECHHHHCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
SFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTI
CCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHCEE
YMCILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
EEEEECCHHHHHCCCCCCEEEEHHHHHHHCCCCCEEEEEEEECCC
>Mature Secondary Structure
MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHH
SRSATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYW
HHHHHEEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEE
LDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLRTWGENVYCLS
ECCCCCCCEEEEEECHHHHCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
SFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTI
CCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHCEE
YMCILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
EEEEECCHHHHHCCCCCCEEEEHHHHHHHCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]