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The map label for this gene is ydcX [H]

Identifier: 16764940

GI number: 16764940

Start: 1686262

End: 1686525

Strand: Reverse

Name: ydcX [H]

Synonym: STM1596

Alternate gene names: 16764940

Gene position: 1686525-1686262 (Counterclockwise)

Preceding gene: 161353598

Following gene: 16764936

Centisome position: 34.72

GC content: 44.32

Gene sequence:

>264_bases
TTGCTGTTAAGGCTGATAAACCTTGATGTGCGTCAAATAAAAAGAGCATATTGCGCGCGTTTTTTCCTCTGGTTGGCGTG
GATGCCTGATATGACCCTCTTTCAAAAGATATTAATTTTTTACGCCGTCATGGCGGTGATATCATCCCTGATCACCTGGT
TTTTGACTCATGACAAAAAACGAATTCGTTTCCTGAGCGCCTTTTTGGTTGGCGCGACATGGCCGATAAGTTTCCCCGTC
GCATTGCTGTTTTCGCTTTTCTGA

Upstream 100 bases:

>100_bases
CCTTTCATCATAACCCCTATGGGTATAGTACGGGTTGGCGAGATCCGCAATAATACCTAAACAGGATATTCTGTGAGCGG
AGCCGTGCATTGAGAACGTT

Downstream 100 bases:

>100_bases
CCTCAAGCCCGATACAGGTTACCGGGCATGGTTTTTCCGCCAGGTCAGGCTATCAGGGCAATTAATTGCGCTCTGTCTAC
GTCGGTAACGTCCTGCGGAT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MLLRLINLDVRQIKRAYCARFFLWLAWMPDMTLFQKILIFYAVMAVISSLITWFLTHDKKRIRFLSAFLVGATWPISFPV
ALLFSLF

Sequences:

>Translated_87_residues
MLLRLINLDVRQIKRAYCARFFLWLAWMPDMTLFQKILIFYAVMAVISSLITWFLTHDKKRIRFLSAFLVGATWPISFPV
ALLFSLF
>Mature_87_residues
MLLRLINLDVRQIKRAYCARFFLWLAWMPDMTLFQKILIFYAVMAVISSLITWFLTHDKKRIRFLSAFLVGATWPISFPV
ALLFSLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjdO [H]

Homologues:

Organism=Escherichia coli, GI87081912, Length=57, Percent_Identity=82.4561403508772, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI87082373, Length=57, Percent_Identity=66.6666666666667, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019689 [H]

Pfam domain/function: PF10753 DUF2566 [H]

EC number: NA

Molecular weight: Translated: 10347; Mature: 10347

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRLINLDVRQIKRAYCARFFLWLAWMPDMTLFQKILIFYAVMAVISSLITWFLTHDKK
CCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RIRFLSAFLVGATWPISFPVALLFSLF
HHHHHHHHHHHCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MLLRLINLDVRQIKRAYCARFFLWLAWMPDMTLFQKILIFYAVMAVISSLITWFLTHDKK
CCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RIRFLSAFLVGATWPISFPVALLFSLF
HHHHHHHHHHHCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]