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The map label for this gene is ynfD [H]

Identifier: 16764845

GI number: 16764845

Start: 1579547

End: 1579855

Strand: Reverse

Name: ynfD [H]

Synonym: STM1500

Alternate gene names: 16764845

Gene position: 1579855-1579547 (Counterclockwise)

Preceding gene: 16764847

Following gene: 16764844

Centisome position: 32.52

GC content: 54.69

Gene sequence:

>309_bases
ATGATGAAAATCGCAACTGCAATAGCCGCTCTGGCGTTAGTTAGCGCCCCCTCGCTGGTGATGGCGGCACCGGGATCGTG
CGAGAGAGTAAAAAGCGATATTGAACAACGTATCATCAATAACGGCGTGCCGGCGGATAATTTTACGCTCACTATCGTTC
CTAACGACCAGGCCGATCAGCCGGACTCACAGGTGGTGGGCCATTGCGCGAACGACACGCATAAAATTCTTTATACCCGC
ACCAGCAGCGGCAATGCGCCAGCCAATACCTCTCCCGCTCAGGACGGTTCATCCGCCGAACCGCAATAA

Upstream 100 bases:

>100_bases
TATCACCAGGATGAAAAGATATTTATCATCATATTAGCAAATACAGTTATTTACACGAAAAATGCTAAGCTTAGAACATC
GTCATTAATCACAGGAGTTC

Downstream 100 bases:

>100_bases
CCTCCTCCTGCCCTCCGGGTCCGGAGGGTAACGCTCTTTGACATGGATTAATAATCCTTACTCCCAAAGGGGTAAACTCA
TTACATCATTAGCATGTTAA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MMKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTR
TSSGNAPANTSPAQDGSSAEPQ

Sequences:

>Translated_102_residues
MMKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTR
TSSGNAPANTSPAQDGSSAEPQ
>Mature_102_residues
MMKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTR
TSSGNAPANTSPAQDGSSAEPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081940, Length=101, Percent_Identity=71.2871287128713, Blast_Score=135, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010595
- ProDom:   PD336997 [H]

Pfam domain/function: PF06649 DUF1161 [H]

EC number: NA

Molecular weight: Translated: 10575; Mature: 10575

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQ
CCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
PDSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ
CHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQ
CCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
PDSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ
CHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784 [H]