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The map label for this gene is ynfE [H]

Identifier: 16764844

GI number: 16764844

Start: 1576952

End: 1579393

Strand: Reverse

Name: ynfE [H]

Synonym: STM1499

Alternate gene names: 16764844

Gene position: 1579393-1576952 (Counterclockwise)

Preceding gene: 16764845

Following gene: 16764843

Centisome position: 32.51

GC content: 54.22

Gene sequence:

>2442_bases
GTGATGCCCGGAGAAAAGCAACAAACAGGCGTTAGCCGCAGGACGTTAGTGAAATCAGCGGCGCTTGGCTCACTGGCGCT
GGCTGCCGGAGGCGTATCTTTACCGTTTGGGATGCGTACCGCGGCCGCGGCGGTGCAGCAGGCTATGCGCAACGAAGAAG
ATAAAATCGTCTGGGGCGCCTGTTCGGTCAACTGCGGCAGTCGCTGCGCCCTGCGTCTGCATGTAAAAGATAATGAAGTC
TGGTGGGTTGAAACTGATAACACTGGCGACGATGTCTACGGCAATCATCAGGTTCGCGCCTGCCTGCGGGGCCGTTCAAT
CCGTCGGCGTATTAACCATCCGGATCGCCTTAACTATCCCATGAAACGCGTTGGCCGCCGCGGCGAAGGCAAATTTGAAC
GCATTAGCTGGCAGGAAGCACTGGACACCATTAGCGCCAGCCTGAAAAAGACCGTAGAGACCTACGGCAATGAAGCCGTT
TATATCCACTATTCATCCGGCATCGTAGGCGGCAACATAACCCGCTCGTCGCCTGCCGCCTCGCCGGTGAAGCGTTTGAT
GAACTGCTACGGCGGTTCGTTGAATCAATACGGCTCATACAGTACCGCGCAAATTTCTTGCGCCATGCCCTACACCTATG
GTTCCAACGACGGCAACAGCACATCTGATATCGAAAACAGTAAACTGGTGGTCATGTTCGGCAATAATCCGGCTGAAACA
CGCATGAGCGGCGGCGGCATTACCTGGTTTCTGGAGCAAGCGCGTGAACGCTCAAATGCGCGCATGATCGTAATAGATCC
GCGCTATACCGATACCGCTGCCGGACGTGAAGACGAGTGGATACCGATTCGCCCCGGCACCGATGCCGCGCTGGTGGCGG
GAATTGCCTGGGTATTGATTAACGAAAATCTCGTTGACCAGCCTTTTCTCGATAACTATTGCATCGGCTACGATGAAAAG
ACCCTTCCGGCTGACGCGCCCCCCAATGGCCATTATAAGGCTTATATTTTGGGTCAGGGCGAGGACGGTATCGCCAAAAC
GCCGCAGTGGGCATCGCATATTACCGGCATCCCCGCCGATCGGATTATCAAACTGGCGCGCGAGATAGGCAGCGTCAAGC
CGGCCTACATCTGTCAGGGTTGGGGCCCGCAGCGTCAGGCGAACGGCGAACAAACCGCTCGCGCCATCGCCATGTTACCG
ATTCTGACCGGCAACGTCGGCATTCATGGCGGTAATAGCGGCGCACGCGAATCCACTTACACCATTACCATTGAACGTCT
GCCGGTCCTGGAGAATCCCGTTAAAACCGCCATCTCCTGCTTTAGCTGGACGGACGCCATTGCGCGCGGCCCGGAAATGA
CCGCCCTGCGCGACGGCGTACGCGGCAAAGATAAGCTGGATGTCCCGATCAAATTTCTATGGAACTACGCTGGCAACACC
CTGATTAATCAGCATTCGGATATTAATAAAACCCATGAAATTCTTCAGGATGAAGCGAAATGCGAAATGATTGTGGTCAT
CGACAACTTTATGACCTCTTCCGCGAAGTACGCTGATATTTTACTGCCGGATCTCATGACCGTCGAACAGGAGGATATCA
TCCCCAATGATTACGCCGGCAATATGGGATATCTGATTTTTATCCAACCGGCGACGACGCCTAAGTTCGAGCGCAAGCCC
ATCTACTGGGTACTCAGCGAAATCGCCAGACGCCTCGGCGACGATGTGTATCAGCGGTTTACCGAAGGCCGTACACAGGC
GCAATGGCTGCAATATCTGTACGCCAAAATGCAGGCAAGAGATCCGGCATTGCCCGCGTATGACGATCTGAAAAAAATGG
GCATCTATAAACGCAAAGATCCCAACGGCCACTTTGTCGCCTATAAAAAATTTCGTGAAGATCCGCAGGCCAATCCGTTA
AAAACGCCGTCCGGTAAAATCGAAATCTACTCAAGCAAACTCGCTCACATCGCCAGTACCTGGGAGCTGGCGGAAGGCGA
CGTGATAAGCCCACTGCCGATTTATACCCCTACTTTTGAAGGATGGGACGATCCGAAGCGGAGCACCTTCCCGCTACAGC
TGTTTGGCTTTCACTATAAATCCCGTACCCATTCAAGCTACGGCAATATTGATGTTCTGCAGGCCGCCTGTCGCCAGGAG
GTGTGGATAAATCCGCTCGATGCGCAAAAACGCGGTATCGCGAATGGCGATAAGGTTCGCGTCTTTAACGATCGTGGAGA
GGTGCGTCTACCCGCCAAAGTCACGCCGCGTATTCTGCCGGGCGTCAGCGCGATGGGTCAGGGCGCATGGCATAATGCGG
ATATGGCTGGCGATAAAATTGACCACGGCGCCTGCATCAATACGCTCACGACGCTGCGTCCTTCCCCCCTGGCAAAAGGG
AATCCTCAACATACAAATCTGGTGGAAATCGAAAAAATCTAA

Upstream 100 bases:

>100_bases
ATCCTTACTCCCAAAGGGGTAAACTCATTACATCATTAGCATGTTAATAATTTCGTTATAGTTATCAATATATAGCGAAA
TAATAACGACAATGGAGTGA

Downstream 100 bases:

>100_bases
GCCGCCTGCTCCGGGACGTTTTTACGCGCCCGGAGCTCCCCGTTTTGCGAACACAACGACATTTAAAACTCTTTTTTGGA
TGAGCATAGTGAGCTGTTAT

Product: dimethyl sulphoxide reductase chain A1

Products: NA

Alternate protein names: DMSO reductase [H]

Number of amino acids: Translated: 813; Mature: 813

Protein sequence:

>813_residues
MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEV
WWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAV
YIHYSSGIVGGNITRSSPAASPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTSDIENSKLVVMFGNNPAET
RMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGIAWVLINENLVDQPFLDNYCIGYDEK
TLPADAPPNGHYKAYILGQGEDGIAKTPQWASHITGIPADRIIKLAREIGSVKPAYICQGWGPQRQANGEQTARAIAMLP
ILTGNVGIHGGNSGARESTYTITIERLPVLENPVKTAISCFSWTDAIARGPEMTALRDGVRGKDKLDVPIKFLWNYAGNT
LINQHSDINKTHEILQDEAKCEMIVVIDNFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATTPKFERKP
IYWVLSEIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQARDPALPAYDDLKKMGIYKRKDPNGHFVAYKKFREDPQANPL
KTPSGKIEIYSSKLAHIASTWELAEGDVISPLPIYTPTFEGWDDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQE
VWINPLDAQKRGIANGDKVRVFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKIDHGACINTLTTLRPSPLAKG
NPQHTNLVEIEKI

Sequences:

>Translated_813_residues
MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEV
WWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAV
YIHYSSGIVGGNITRSSPAASPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTSDIENSKLVVMFGNNPAET
RMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGIAWVLINENLVDQPFLDNYCIGYDEK
TLPADAPPNGHYKAYILGQGEDGIAKTPQWASHITGIPADRIIKLAREIGSVKPAYICQGWGPQRQANGEQTARAIAMLP
ILTGNVGIHGGNSGARESTYTITIERLPVLENPVKTAISCFSWTDAIARGPEMTALRDGVRGKDKLDVPIKFLWNYAGNT
LINQHSDINKTHEILQDEAKCEMIVVIDNFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATTPKFERKP
IYWVLSEIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQARDPALPAYDDLKKMGIYKRKDPNGHFVAYKKFREDPQANPL
KTPSGKIEIYSSKLAHIASTWELAEGDVISPLPIYTPTFEGWDDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQE
VWINPLDAQKRGIANGDKVRVFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKIDHGACINTLTTLRPSPLAKG
NPQHTNLVEIEKI
>Mature_813_residues
MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEV
WWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDRLNYPMKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAV
YIHYSSGIVGGNITRSSPAASPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTSDIENSKLVVMFGNNPAET
RMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGIAWVLINENLVDQPFLDNYCIGYDEK
TLPADAPPNGHYKAYILGQGEDGIAKTPQWASHITGIPADRIIKLAREIGSVKPAYICQGWGPQRQANGEQTARAIAMLP
ILTGNVGIHGGNSGARESTYTITIERLPVLENPVKTAISCFSWTDAIARGPEMTALRDGVRGKDKLDVPIKFLWNYAGNT
LINQHSDINKTHEILQDEAKCEMIVVIDNFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATTPKFERKP
IYWVLSEIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQARDPALPAYDDLKKMGIYKRKDPNGHFVAYKKFREDPQANPL
KTPSGKIEIYSSKLAHIASTWELAEGDVISPLPIYTPTFEGWDDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQE
VWINPLDAQKRGIANGDKVRVFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKIDHGACINTLTTLRPSPLAKG
NPQHTNLVEIEKI

Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787870, Length=812, Percent_Identity=86.9458128078818, Blast_Score=1502, Evalue=0.0,
Organism=Escherichia coli, GI171474008, Length=805, Percent_Identity=71.304347826087, Blast_Score=1228, Evalue=0.0,
Organism=Escherichia coli, GI87081797, Length=806, Percent_Identity=68.1141439205955, Blast_Score=1148, Evalue=0.0,
Organism=Escherichia coli, GI145693196, Length=780, Percent_Identity=30.1282051282051, Blast_Score=282, Evalue=5e-77,
Organism=Escherichia coli, GI1787231, Length=763, Percent_Identity=30.9305373525557, Blast_Score=275, Evalue=1e-74,
Organism=Escherichia coli, GI87081994, Length=856, Percent_Identity=28.3878504672897, Blast_Score=254, Evalue=2e-68,
Organism=Escherichia coli, GI3868721, Length=791, Percent_Identity=23.8938053097345, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI3868720, Length=460, Percent_Identity=25.6521739130435, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI3868719, Length=466, Percent_Identity=24.2489270386266, Blast_Score=94, Evalue=5e-20,
Organism=Escherichia coli, GI1787741, Length=443, Percent_Identity=26.1851015801354, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788534, Length=887, Percent_Identity=22.3224351747463, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011888
- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR006963
- InterPro:   IPR006655
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: 1.8.99.- [C]

Molecular weight: Translated: 90135; Mature: 90135

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00932 MOLYBDOPTERIN_PROK_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGA
CCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
CSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDRLNYP
EECCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
MKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAVYIHYSSGIVGGNITRSSPAA
HHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCCCCH
SPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTSDIENSKLVVMFGNNPAET
HHHHHHHHHHCCCCHHCCCCCCEEEEEEECEEECCCCCCCCCCCCCCEEEEEECCCCHHC
RMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGIAWVLI
EECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHEEEEEE
NENLVDQPFLDNYCIGYDEKTLPADAPPNGHYKAYILGQGEDGIAKTPQWASHITGIPAD
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCHH
RIIKLAREIGSVKPAYICQGWGPQRQANGEQTARAIAMLPILTGNVGIHGGNSGARESTY
HHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHEEEEEECCEEEECCCCCCCCCEE
TITIERLPVLENPVKTAISCFSWTDAIARGPEMTALRDGVRGKDKLDVPIKFLWNYAGNT
EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHEEHHCCCC
LINQHSDINKTHEILQDEAKCEMIVVIDNFMTSSAKYADILLPDLMTVEQEDIIPNDYAG
EECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCHHCCCCCCCCC
NMGYLIFIQPATTPKFERKPIYWVLSEIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQAR
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
DPALPAYDDLKKMGIYKRKDPNGHFVAYKKFREDPQANPLKTPSGKIEIYSSKLAHIAST
CCCCCCHHHHHHCCCEECCCCCCCEEEEHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHH
WELAEGDVISPLPIYTPTFEGWDDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQE
HECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
VWINPLDAQKRGIANGDKVRVFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKI
HCCCCCCHHHCCCCCCCEEEEECCCCCEEECCCCCCHHCCCCHHHCCCCCCCCCCCCCCC
DHGACINTLTTLRPSPLAKGNPQHTNLVEIEKI
CCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGA
CCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
CSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDRLNYP
EECCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
MKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAVYIHYSSGIVGGNITRSSPAA
HHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCCCCH
SPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTSDIENSKLVVMFGNNPAET
HHHHHHHHHHCCCCHHCCCCCCEEEEEEECEEECCCCCCCCCCCCCCEEEEEECCCCHHC
RMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGREDEWIPIRPGTDAALVAGIAWVLI
EECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHEEEEEE
NENLVDQPFLDNYCIGYDEKTLPADAPPNGHYKAYILGQGEDGIAKTPQWASHITGIPAD
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCHH
RIIKLAREIGSVKPAYICQGWGPQRQANGEQTARAIAMLPILTGNVGIHGGNSGARESTY
HHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHEEEEEECCEEEECCCCCCCCCEE
TITIERLPVLENPVKTAISCFSWTDAIARGPEMTALRDGVRGKDKLDVPIKFLWNYAGNT
EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHEEHHCCCC
LINQHSDINKTHEILQDEAKCEMIVVIDNFMTSSAKYADILLPDLMTVEQEDIIPNDYAG
EECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCHHCCCCCCCCC
NMGYLIFIQPATTPKFERKPIYWVLSEIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQAR
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
DPALPAYDDLKKMGIYKRKDPNGHFVAYKKFREDPQANPLKTPSGKIEIYSSKLAHIAST
CCCCCCHHHHHHCCCEECCCCCCCEEEEHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHH
WELAEGDVISPLPIYTPTFEGWDDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQE
HECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHH
VWINPLDAQKRGIANGDKVRVFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKI
HCCCCCCHHHCCCCCCCEEEEECCCCCEEECCCCCCHHCCCCHHHCCCCCCCCCCCCCCC
DHGACINTLTTLRPSPLAKGNPQHTNLVEIEKI
CCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: May Bind 4Fe-4S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]