| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
Click here to switch to the map view.
The map label for this gene is ynfF [H]
Identifier: 16764843
GI number: 16764843
Start: 1574418
End: 1576853
Strand: Reverse
Name: ynfF [H]
Synonym: STM1498
Alternate gene names: 16764843
Gene position: 1576853-1574418 (Counterclockwise)
Preceding gene: 16764844
Following gene: 16764842
Centisome position: 32.46
GC content: 55.34
Gene sequence:
>2436_bases ATGAAAATCACCAACCCTGAGGCATTAATGGCGGCCAGTCTCAGCCGACGAAGCCTGGTGAAAACCTCCGCTATCGGTAG CCTTGCGCTTGCCAGTAGCGCTTTCACCCTTCCGTTCTCCCGCATCGCACACGCCGCAGCAGACCTCGCATCCGGCAATG TGGCAGAAAAAGCGGTCTGGAGTTCATGTACCGTTAACTGCGGCAGCCGCTGCCTGCTGCGCCTGCACGTAAAAGATGAC ACCGTATATTGGGTTGAATCAGATACCACGGGCAACGATGAATATGGCAACCATCAGGTACGCGCCTGCCTGCGCGGCCG TTCTATTCGTCGCCGGATGAATCATCCCGATCGCCTGAAATATCCGATGAAACGCGTTGGTAAACGAGGAGAAGGCAAAT TCGAACGTATCAGTTGGGATGAAGCGTTGGATACCATCGGCGATAACCTGAAACGTATCCTCAAGGACTACGGCAACGAA GCGGTACATGTGCTTTACGGTACCGGCGTGGACGGCGGCAATATTACCAATTCTAACGTACCGTATCGCCTGATGAACGC CTGCGGCGGCTATCTCAGCCGTTACGGTAGCTACAGCACCGCCCAAATCAGCGCGGCCATGAGCTATATGTTCGGCGGCA ATGACGGCAACAGTCCGGATGATATCGCCAATACAAAACTGGTGGTGATGTTTGGCAATAATCCCGCGGAAACACGTATG AGCGGCGGCGGCGTGACATACTATGTCGAACAGGCGCGCGAGCGCTCCAACGCCCGGATGATCGTCATTGACCCGCGTTA TAACGACACTGCCGCTGGCCGAGAAGACGAGTGGCTGCCGATTCGCCCAGGTACCGATGGCGCGCTGGCGGCGGCAATCG CCTGGGTGCTGATTACCGAAGATCTTATTGATAAACCGTTTCTGGATAAATACTGCATCGGCTACGACGAAACCACTCTG CCCGCCTCGGCCCCGCGTAACGCGCACTATAAAGCCTATATTTTGGGTCAGGGCGACGACGGTATTGCTAAAACGCCGCA ATGGGCCGCGCAGATTACCAGTATTCCGGCGGAAAAAATCATTCAACTGGCGCGGGAAATCGGCTCGGCGAAACCGGCTT ACATTTGCCAGGGCTGGGGACCGCAACGCCACTCTAACGGGGAGCAGACCGCACGCGCAATCGCCATGCTGTCTGTACTC ACCGGTAACGTCGGCATAAATGGCGGTAATTCCGGCGTGCGCGAAGGCACCTGGGATCTGGGCGTCGAATGGTTTTCTAT GCTGGAGAACCCGGTAAAAACCCAGATTTCGGTCTTTACCTGGACCGACGCTATCGATCATGGCGCGGAAATGACCGCCA CACGCGACGGCGTGCGGGGAAAAGACAAGCTCGACGTGCCGATCAAATTTTTGTGGTGCTACGCCAGTAATACGCTGATC AATCAGCATGGCGACATCGCCCACACCCACGAGGTGCTTCAGGACGACAGTAAATGTGAAATGATCGTCGGCATCGAGCA CTTTATGACCGCGTCGGCAAAATATTGCGACATTCTGCTGCCTGATTTAATGCCGACCGAGCAGGAAGATCTGATTTCCC ACGAATCCGCAGGCAATATGGGCTATGTCATTCTTGGTCAGCCCGCCACCTCGCCGAAATTTGAAAGAAAGCCCATTTAC TGGACGCTCAGTGAAGTGGCTAAACGGCTTGGTCCGGACGTATACCAGACCTTCACAGAAGGCCGCACGCAGCATGAGTG GGTCAAATACCTGCACGCAAAAACCAAAGCGCGTAACCCGGAAATGCCGGATTACGAAGAGATGAAACAGACAGGGATTT TCAAGAAAAAATGCCCGGAGGAGCACTACGTCGCTTTCCGCGCCTTCCGCGAAGACCCTGCCGCCAACCCACTGAAAACG CCGTCCGGTAAAATCGAAATCTATTCCGAGCGTCTGGCAACCCTCGCCAACACGTGGGAGCTGAAGAAAGATGAGATTAT CCATCCTTTACCCGCCTATACGCCAGGCTTTGACGGTTGGGACGATCCGCTTCGTCAGCGCTACCCGCTACAGCTAACCG GCTTCCACTATAAAGCGCGTACCCACTCCAGCTACGGCAATATCGACATCCTGCAACAGGCGTGTCCGCAGGAGATCTGG ATCAACCCGATTGATGCGCAAGCGCGCGGCATTCAGCATGGCGACACCGTGCGGGTCTTTAACCAGAATGGAGAGATGCT CATTCCGGCAAAAGTCACGCCGCGCATATTGCCCGGCGTCACCGCTATCGGCCAGGGCGCCTGGTTAAATGCCGACATGT TTGGCGACAAAGTCGATCGCGGCGGCTCCATTAACATTCTGACGTCGCACCGGCCTTCCCCACTGGCGAAAGGTAATCCG TCACACAGTAATCTTGTTCAGGTTGAAAAGGCGTAA
Upstream 100 bases:
>100_bases AAGCCGCCTGCTCCGGGACGTTTTTACGCGCCCGGAGCTCCCCGTTTTGCGAACACAACGACATTTAAAACTCTTTTTTG GATGAGCATAGTGAGCTGTT
Downstream 100 bases:
>100_bases GGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGTCGTTGCACCGGTTGCAAAACCTGCGAACTGGCCT GCAAGGACTACAAAGATCTC
Product: dimethyl sulphoxide reductase
Products: NA
Alternate protein names: DMSO reductase [H]
Number of amino acids: Translated: 811; Mature: 811
Protein sequence:
>811_residues MKITNPEALMAASLSRRSLVKTSAIGSLALASSAFTLPFSRIAHAAADLASGNVAEKAVWSSCTVNCGSRCLLRLHVKDD TVYWVESDTTGNDEYGNHQVRACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNE AVHVLYGTGVDGGNITNSNVPYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNSPDDIANTKLVVMFGNNPAETRM SGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALAAAIAWVLITEDLIDKPFLDKYCIGYDETTL PASAPRNAHYKAYILGQGDDGIAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTARAIAMLSVL TGNVGINGGNSGVREGTWDLGVEWFSMLENPVKTQISVFTWTDAIDHGAEMTATRDGVRGKDKLDVPIKFLWCYASNTLI NQHGDIAHTHEVLQDDSKCEMIVGIEHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILGQPATSPKFERKPIY WTLSEVAKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNPEMPDYEEMKQTGIFKKKCPEEHYVAFRAFREDPAANPLKT PSGKIEIYSERLATLANTWELKKDEIIHPLPAYTPGFDGWDDPLRQRYPLQLTGFHYKARTHSSYGNIDILQQACPQEIW INPIDAQARGIQHGDTVRVFNQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDRGGSINILTSHRPSPLAKGNP SHSNLVQVEKA
Sequences:
>Translated_811_residues MKITNPEALMAASLSRRSLVKTSAIGSLALASSAFTLPFSRIAHAAADLASGNVAEKAVWSSCTVNCGSRCLLRLHVKDD TVYWVESDTTGNDEYGNHQVRACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNE AVHVLYGTGVDGGNITNSNVPYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNSPDDIANTKLVVMFGNNPAETRM SGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALAAAIAWVLITEDLIDKPFLDKYCIGYDETTL PASAPRNAHYKAYILGQGDDGIAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTARAIAMLSVL TGNVGINGGNSGVREGTWDLGVEWFSMLENPVKTQISVFTWTDAIDHGAEMTATRDGVRGKDKLDVPIKFLWCYASNTLI NQHGDIAHTHEVLQDDSKCEMIVGIEHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILGQPATSPKFERKPIY WTLSEVAKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNPEMPDYEEMKQTGIFKKKCPEEHYVAFRAFREDPAANPLKT PSGKIEIYSERLATLANTWELKKDEIIHPLPAYTPGFDGWDDPLRQRYPLQLTGFHYKARTHSSYGNIDILQQACPQEIW INPIDAQARGIQHGDTVRVFNQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDRGGSINILTSHRPSPLAKGNP SHSNLVQVEKA >Mature_811_residues MKITNPEALMAASLSRRSLVKTSAIGSLALASSAFTLPFSRIAHAAADLASGNVAEKAVWSSCTVNCGSRCLLRLHVKDD TVYWVESDTTGNDEYGNHQVRACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNE AVHVLYGTGVDGGNITNSNVPYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNSPDDIANTKLVVMFGNNPAETRM SGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALAAAIAWVLITEDLIDKPFLDKYCIGYDETTL PASAPRNAHYKAYILGQGDDGIAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTARAIAMLSVL TGNVGINGGNSGVREGTWDLGVEWFSMLENPVKTQISVFTWTDAIDHGAEMTATRDGVRGKDKLDVPIKFLWCYASNTLI NQHGDIAHTHEVLQDDSKCEMIVGIEHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILGQPATSPKFERKPIY WTLSEVAKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNPEMPDYEEMKQTGIFKKKCPEEHYVAFRAFREDPAANPLKT PSGKIEIYSERLATLANTWELKKDEIIHPLPAYTPGFDGWDDPLRQRYPLQLTGFHYKARTHSSYGNIDILQQACPQEIW INPIDAQARGIQHGDTVRVFNQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDRGGSINILTSHRPSPLAKGNP SHSNLVQVEKA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI171474008, Length=810, Percent_Identity=91.6049382716049, Blast_Score=1571, Evalue=0.0, Organism=Escherichia coli, GI1787870, Length=801, Percent_Identity=71.1610486891386, Blast_Score=1226, Evalue=0.0, Organism=Escherichia coli, GI87081797, Length=818, Percent_Identity=64.9144254278729, Blast_Score=1113, Evalue=0.0, Organism=Escherichia coli, GI145693196, Length=753, Percent_Identity=30.4116865869854, Blast_Score=280, Evalue=2e-76, Organism=Escherichia coli, GI1787231, Length=751, Percent_Identity=28.8948069241012, Blast_Score=252, Evalue=5e-68, Organism=Escherichia coli, GI87081994, Length=849, Percent_Identity=29.2108362779741, Blast_Score=250, Evalue=3e-67, Organism=Escherichia coli, GI3868721, Length=779, Percent_Identity=24.7753530166881, Blast_Score=138, Evalue=2e-33, Organism=Escherichia coli, GI3868720, Length=459, Percent_Identity=23.3115468409586, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI3868719, Length=498, Percent_Identity=22.4899598393574, Blast_Score=78, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011888 - InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 89774; Mature: 89774
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITNPEALMAASLSRRSLVKTSAIGSLALASSAFTLPFSRIAHAAADLASGNVAEKAVW CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHH SSCTVNCGSRCLLRLHVKDDTVYWVESDTTGNDEYGNHQVRACLRGRSIRRRMNHPDRLK HHCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHC YPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNEAVHVLYGTGVDGGNITNSNV CHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC PYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNSPDDIANTKLVVMFGNNPAETRM CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCEEEEEECCCCHHHEE SGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALAAAIAWVLITE CCCCEEEEEHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH DLIDKPFLDKYCIGYDETTLPASAPRNAHYKAYILGQGDDGIAKTPQWAAQITSIPAEKI HHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCHHHH IQLAREIGSAKPAYICQGWGPQRHSNGEQTARAIAMLSVLTGNVGINGGNSGVREGTWDL HHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH GVEWFSMLENPVKTQISVFTWTDAIDHGAEMTATRDGVRGKDKLDVPIKFLWCYASNTLI HHHHHHHHCCCHHCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEE NQHGDIAHTHEVLQDDSKCEMIVGIEHFMTASAKYCDILLPDLMPTEQEDLISHESAGNM CCCCCHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHEEECCCCCCCCHHHHHHHCCCCCE GYVILGQPATSPKFERKPIYWTLSEVAKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNP EEEEECCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC EMPDYEEMKQTGIFKKKCPEEHYVAFRAFREDPAANPLKTPSGKIEIYSERLATLANTWE CCCCHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHC LKKDEIIHPLPAYTPGFDGWDDPLRQRYPLQLTGFHYKARTHSSYGNIDILQQACPQEIW CCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECEEEEEECCCCCCCHHHHHHHCCHHHC INPIDAQARGIQHGDTVRVFNQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDR CCCCCHHHCCCCCCCEEEEECCCCCEEEECCCCCCHHCCCCCCCCCCEEEHHHCCCCCCC GGSINILTSHRPSPLAKGNPSHSNLVQVEKA CCEEEEEECCCCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure MKITNPEALMAASLSRRSLVKTSAIGSLALASSAFTLPFSRIAHAAADLASGNVAEKAVW CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHH SSCTVNCGSRCLLRLHVKDDTVYWVESDTTGNDEYGNHQVRACLRGRSIRRRMNHPDRLK HHCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHC YPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNEAVHVLYGTGVDGGNITNSNV CHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC PYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNSPDDIANTKLVVMFGNNPAETRM CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCEEEEEECCCCHHHEE SGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLPIRPGTDGALAAAIAWVLITE CCCCEEEEEHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH DLIDKPFLDKYCIGYDETTLPASAPRNAHYKAYILGQGDDGIAKTPQWAAQITSIPAEKI HHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCHHHH IQLAREIGSAKPAYICQGWGPQRHSNGEQTARAIAMLSVLTGNVGINGGNSGVREGTWDL HHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH GVEWFSMLENPVKTQISVFTWTDAIDHGAEMTATRDGVRGKDKLDVPIKFLWCYASNTLI HHHHHHHHCCCHHCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEE NQHGDIAHTHEVLQDDSKCEMIVGIEHFMTASAKYCDILLPDLMPTEQEDLISHESAGNM CCCCCHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHEEECCCCCCCCHHHHHHHCCCCCE GYVILGQPATSPKFERKPIYWTLSEVAKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNP EEEEECCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCC EMPDYEEMKQTGIFKKKCPEEHYVAFRAFREDPAANPLKTPSGKIEIYSERLATLANTWE CCCCHHHHHHCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHC LKKDEIIHPLPAYTPGFDGWDDPLRQRYPLQLTGFHYKARTHSSYGNIDILQQACPQEIW CCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECEEEEEECCCCCCCHHHHHHHCCHHHC INPIDAQARGIQHGDTVRVFNQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDR CCCCCHHHCCCCCCCEEEEECCCCCEEEECCCCCCHHCCCCCCCCCCEEEHHHCCCCCCC GGSINILTSHRPSPLAKGNPSHSNLVQVEKA CCEEEEEECCCCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: Fe; Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]