Click here to switch to the map view.

The map label for this gene is ydhK [H]

Identifier: 16764789

GI number: 16764789

Start: 1516547

End: 1518586

Strand: Reverse

Name: ydhK [H]

Synonym: STM1441

Alternate gene names: 16764789

Gene position: 1518586-1516547 (Counterclockwise)

Preceding gene: 16764790

Following gene: 16764785

Centisome position: 31.26

GC content: 55.88

Gene sequence:

>2040_bases
ATGAAACTCTCCCTGCCGGCCCTGCGAAATACGCCCTGGTTTAAAGCGACCTCCGGCCAGTGGCGTTACGCGTTGCGCAA
TACCATTGCCATGTGTCTCGCGCTGACATTCGCTTATTATCTCAATCTGGATGAGCCCTACTGGGCAATGACTTCGGCCG
CAGTGGTGAGCTTTCCGACCGTAGGCGGCGTAATCAGTAAAAGTCTGGGGCGTATTGCCGGGAGTTTACTCGGCGCGACC
GCCGCGTTAATTATTGCTGGCCATACGCTGAATGAACCCTGGTTGTTCTTATTTAGCATGGCCGCCTGGATCGGTTTTTG
TACCTGGGCCTGCGCGCATTTTACCAATAATGCCGCTTATGCTTTCCAGTTGTCCGGCTACACGGCGGCGATCATCGCGT
TCCCGATGGTTAATATTGTAGAAATCACGCAGTTGTGGGATATCGCCCAGGCACGTGTATGTGAAGTTATCGTCGGCATC
CTCTGTGGCGGCATGATGATGATGATCCTACCCAGCACATCGGATGGTACCGCCCTGCTCACCGCGTTTAAAAACATGCA
TGCGCGCTTGCTGGAACATGCCAGTCTACTGTGGCAGCCGGAGACTACTGACGCTATCCGCTCCGCGCATGAGGGGGTCA
TTGGGCAAATCCTGACCATGAACCTGCTGCGTATTCAGGCCTTCTGGAGTCACTACCGTTTTCGCCGCCAGAATGCATTG
CTAAATGCATTGTTACACCAGCAATTACGGTTAACCAGCGTGATCTCCAGTCTGCGTAGAATGCTTTTAAACTGGCCGAC
GCCGCCGGAAAACAGCCGCGAAGTCATTGAGCAACTCTTAGCTGAGTTGGCAAAACCGCGCGCGGACAGCTACACCGTGG
CGCAGATTATTGCGCCGCTACGCCCGCAGGATGAACAGGATTATCGTCACCTCGCGTTCTGGCAGCGATTACGCTATTTT
TGCCAGCTATATCTGCGCAGCAGCCGTCAGTTATATCTGATCGAAAGCGGCGCGCCGGTGGATCAAATCCATATCCGCCG
CACTCCCGGCCTTGCGCGGCATACGGATAACGCAGAGGCCATCTGGAGCGGCGTGCGTACCTTTTGCACGCTCACGGTGA
TTGGCGCCTGGAGTATTGGCGCGCAATGGGAATCCGGGCCCGGCGCATTAACCCTGGCGGCGATCAGTTGCGTCCTCTAC
TCCATCGTCGCCACGCCGTTTAAGTCGCTTTCCTTATTGATGCGTACTTTAGTGCTGCTGTCCTTATTCAGCTTCGTGGT
GAAATTTGGCCTGATGGTGCAAATCACCGATCTGTGGCAATTCTTGCTTTTCCTTTTTCCGCTGTTCGTCACGATGCAAC
TGCTTAAACTGCAGATGCCTAAGCTGGCGGGACTGTGGGGGCAGCTTATCGTTTTTATGGGCTCATTCATCGCCGTGACC
AATCCACCGGTGTACGACTTCGCCGACTTCCTTAACGATAATACCGCCAAGATCGTCGGCGTCGCGATTTCCTGGCTGGC
GTTTGCGATTTTGCGCCCCGGTTCCGATGCCGTAAAAAGCCGCCGCCATATCCGCGCGCTACGCCGGGATTTCGTCGATC
AGCTTAGCCGTCACCCTTCCCATAACGAAAGCGAGTTTGAATCGCTGACCTATCATCACGTCAGTCAGCTCAGCAATAGT
CAGGATGCGCTGGCGCGCCGGTGGTTATTACGTTGGGGAGTGGTGCTGCTGAACTGCTCGCATGTGGTGTGGCAGCTGCG
CGCCTGGGAGTCGCGTTCCGATCCGCTTTCCCGGGTGCGGGATATTTGTATATCCCTGCTGCGCGATGTGATGAGCGAGC
GCGGCGTGCAGCAACGCCCGCTTGCCGTCACGCTACAGGAACTACAGCGTATCTGCGACACGCTCGCACATCATCATCAA
CCCGCCGCGCATGAGCTGGCGGCGATTATCTGGCGTTTACACTGTTCGCTGTCGCAGCTGGAACAGGCTCCAGCGCAGGG
AACACTGGCTCCGGGTTATTTAATGACGCCGCAGGCGTAA

Upstream 100 bases:

>100_bases
TGGCGCAACGCGTACCGGTACGTATCGAATTTGACGCTTTACCGCAGGATATCACGCTCGTCTCCGGCACTACCTGCAGC
GTAGCCATTGGACAGCGGTA

Downstream 100 bases:

>100_bases
CGCATTCCGCCGCCGCCGAGCGGTTTCGGCTGATCGGACATGTTATCGCCGCCCACATGGATCATGAGCGCTTTATCTTT
CACTTCATCAAGAGACTTCA

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 679

Protein sequence:

>679_residues
MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAT
AALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI
LCGGMMMMILPSTSDGTALLTAFKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL
LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVAQIIAPLRPQDEQDYRHLAFWQRLRYF
CQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGAQWESGPGALTLAAISCVLY
SIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT
NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHNESEFESLTYHHVSQLSNS
QDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERGVQQRPLAVTLQELQRICDTLAHHHQ
PAAHELAAIIWRLHCSLSQLEQAPAQGTLAPGYLMTPQA

Sequences:

>Translated_679_residues
MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAT
AALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI
LCGGMMMMILPSTSDGTALLTAFKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL
LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVAQIIAPLRPQDEQDYRHLAFWQRLRYF
CQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGAQWESGPGALTLAAISCVLY
SIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT
NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHNESEFESLTYHHVSQLSNS
QDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERGVQQRPLAVTLQELQRICDTLAHHHQ
PAAHELAAIIWRLHCSLSQLEQAPAQGTLAPGYLMTPQA
>Mature_679_residues
MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAT
AALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI
LCGGMMMMILPSTSDGTALLTAFKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL
LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVAQIIAPLRPQDEQDYRHLAFWQRLRYF
CQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGAQWESGPGALTLAAISCVLY
SIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT
NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHNESEFESLTYHHVSQLSNS
QDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERGVQQRPLAVTLQELQRICDTLAHHHQ
PAAHELAAIIWRLHCSLSQLEQAPAQGTLAPGYLMTPQA

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family [H]

Homologues:

Organism=Escherichia coli, GI1787933, Length=670, Percent_Identity=84.7761194029851, Blast_Score=1129, Evalue=0.0,
Organism=Escherichia coli, GI1789636, Length=287, Percent_Identity=24.0418118466899, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006726 [H]

Pfam domain/function: PF04632 FUSC [H]

EC number: NA

Molecular weight: Translated: 76475; Mature: 76475

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPT
CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH
VGGVISKSLGRIAGSLLGATAALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGILCGGMMMMILPSTSDGTALL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
TAFKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVAQIIAPL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
RPQDEQDYRHLAFWQRLRYFCQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCHHH
IWSGVRTFCTLTVIGAWSIGAQWESGPGALTLAAISCVLYSIVATPFKSLSLLMRTLVLL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHCC
NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPS
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
HNESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVR
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
DICISLLRDVMSERGVQQRPLAVTLQELQRICDTLAHHHQPAAHELAAIIWRLHCSLSQL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EQAPAQGTLAPGYLMTPQA
HCCCCCCCCCCCEECCCCC
>Mature Secondary Structure
MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLDEPYWAMTSAAVVSFPT
CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH
VGGVISKSLGRIAGSLLGATAALIIAGHTLNEPWLFLFSMAAWIGFCTWACAHFTNNAAY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGILCGGMMMMILPSTSDGTALL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
TAFKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQILTMNLLRIQAFWSHYRFRRQNAL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVIEQLLAELAKPRADSYTVAQIIAPL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
RPQDEQDYRHLAFWQRLRYFCQLYLRSSRQLYLIESGAPVDQIHIRRTPGLARHTDNAEA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCHHH
IWSGVRTFCTLTVIGAWSIGAQWESGPGALTLAAISCVLYSIVATPFKSLSLLMRTLVLL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLFSFVVKFGLMVQITDLWQFLLFLFPLFVTMQLLKLQMPKLAGLWGQLIVFMGSFIAVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHCC
NPPVYDFADFLNDNTAKIVGVAISWLAFAILRPGSDAVKSRRHIRALRRDFVDQLSRHPS
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
HNESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVR
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
DICISLLRDVMSERGVQQRPLAVTLQELQRICDTLAHHHQPAAHELAAIIWRLHCSLSQL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EQAPAQGTLAPGYLMTPQA
HCCCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]