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The map label for this gene is ydhJ [H]

Identifier: 16764790

GI number: 16764790

Start: 1518586

End: 1519482

Strand: Reverse

Name: ydhJ [H]

Synonym: STM1442

Alternate gene names: 16764790

Gene position: 1519482-1518586 (Counterclockwise)

Preceding gene: 16764791

Following gene: 16764789

Centisome position: 31.28

GC content: 50.06

Gene sequence:

>897_bases
ATGTCTGGGCCTCGTTTTACTGATCGCGTGGTAAATATGTCGTTAAAAACAATAAAATATTTTTCTACTCTCATTGTCGC
CGTCGTCGCCGTTCTGGCCGCGTGGTGGTTATGGAATTACTATATGCAGTCACCGTGGACGCGCGATGGTAAAATCCGCG
CGGAACAGGTCAGCGTAACGCCACAGGTTTCTGGCAGCATTACCCAACTCAATATCAAAGATAATCAGTTCGTCAACGCC
GGGGACGTTCTCTTTGTCATTGATAAAACGCCCTTCCATATTGCAGAACTTAACGCGCAGGCGCAGTTGGCCAAAGCGCA
GTCCGATCTGGCAAAAGCGAATAATGAAGCCGATCGACGTCGACATTTATCGCGTAACTACATCTCTGCTGAAGATCTGG
ATAGCGCCAATCTGAATGTTAAAGCGATGCAGGCCAACGTAGATGTCGCACTGGCAACGTTAAAACAGGCGCAGTGGCAG
CTTAGCCAGACGGAAGTAAAAGCGCCGGTATCCGGCTGGGTGACCAACCTTTCCACGCGTACCGGTGATTATGCCAGCAC
CGGTAAGCCACTTTTCGCCCTGGTAGATAGCCATTCATTTTATGTAATGGGATATTTCGAAGAAACCAAACTACGCCATA
TCCGCGAAGGTGAGCCTGCATTAATAACACTGTATAGTGGCAATGTTAAGTTACAGGGTCACGTTGGCAGTATCGGGCGC
GCTATTTACGACCAAAGCGTGGAAAGTGACTCCGGTTTAGTGCCCGATATCAAACCCAACGTACCGTGGGTACGTCTGGC
GCAACGCGTACCGGTACGTATCGAATTTGACGCTTTACCGCAGGATATCACGCTCGTCTCCGGCACTACCTGCAGCGTAG
CCATTGGACAGCGGTAA

Upstream 100 bases:

>100_bases
TTATCTGGTTGTTTATTCACCGACTCCTGCGTGACCGGATATACTCTGATGAAATCTGGCATCCCCTGTTAATGGATCTC
TCCCTCTTTACGCTTTGCGT

Downstream 100 bases:

>100_bases
TGAAACTCTCCCTGCCGGCCCTGCGAAATACGCCCTGGTTTAAAGCGACCTCCGGCCAGTGGCGTTACGCGTTGCGCAAT
ACCATTGCCATGTGTCTCGC

Product: multidrug resistance efflux pump

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSGPRFTDRVVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNA
GDVLFVIDKTPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQANVDVALATLKQAQWQ
LSQTEVKAPVSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGR
AIYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR

Sequences:

>Translated_298_residues
MSGPRFTDRVVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNA
GDVLFVIDKTPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQANVDVALATLKQAQWQ
LSQTEVKAPVSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGR
AIYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR
>Mature_297_residues
SGPRFTDRVVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNAG
DVLFVIDKTPFHIAELNAQAQLAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQANVDVALATLKQAQWQL
SQTEVKAPVSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGRA
IYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=285, Percent_Identity=84.2105263157895, Blast_Score=511, Evalue=1e-146,
Organism=Escherichia coli, GI1789637, Length=282, Percent_Identity=39.7163120567376, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1790519, Length=292, Percent_Identity=31.5068493150685, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789041, Length=303, Percent_Identity=28.3828382838284, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788711, Length=311, Percent_Identity=27.9742765273312, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790024, Length=235, Percent_Identity=26.3829787234043, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082036, Length=176, Percent_Identity=27.8409090909091, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789929, Length=120, Percent_Identity=38.3333333333333, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790012, Length=270, Percent_Identity=24.4444444444444, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 33024; Mature: 32893

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPRFTDRVVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEC
PQVSGSITQLNIKDNQFVNAGDVLFVIDKTPFHIAELNAQAQLAKAQSDLAKANNEADRR
CCCCCCEEEEEECCCCEECCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCHHHHH
RHLSRNYISAEDLDSANLNVKAMQANVDVALATLKQAQWQLSQTEVKAPVSGWVTNLSTR
HHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
TGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGR
CCCCCCCCCCEEEEEECCCEEEEEEECHHHHHHHCCCCCEEEEEEECCEEEEECCCHHHH
AIYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR
HHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCEEEEECCEEEEEECCC
>Mature Secondary Structure 
SGPRFTDRVVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQSPWTRDGKIRAEQVSVT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEC
PQVSGSITQLNIKDNQFVNAGDVLFVIDKTPFHIAELNAQAQLAKAQSDLAKANNEADRR
CCCCCCEEEEEECCCCEECCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCHHHHH
RHLSRNYISAEDLDSANLNVKAMQANVDVALATLKQAQWQLSQTEVKAPVSGWVTNLSTR
HHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
TGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPALITLYSGNVKLQGHVGSIGR
CCCCCCCCCCEEEEEECCCEEEEEEECHHHHHHHCCCCCEEEEEEECCEEEEECCCHHHH
AIYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEFDALPQDITLVSGTTCSVAIGQR
HHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCEEEEECCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]