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The map label for this gene is ssaR

Identifier: 16764769

GI number: 16764769

Start: 1498744

End: 1499391

Strand: Direct

Name: ssaR

Synonym: STM1419

Alternate gene names: 16764769

Gene position: 1498744-1499391 (Clockwise)

Preceding gene: 16764768

Following gene: 16764770

Centisome position: 30.85

GC content: 42.9

Gene sequence:

>648_bases
ATGTCTTTACCCGATTCGCCTTTGCAACTGATTGGTATATTGTTTCTGCTTTCAATACTGCCTCTCATTATCGTCATGGG
AACTTCTTTCCTTAAACTGGCGGTGGTATTTTCGATTTTACGAAATGCTCTGGGTATTCAACAAGTCCCCCCAAATATCG
CACTGTATGGCCTTGCGCTTGTACTTTCCTTATTCATTATGGGGCCGACGCTATTAGCTGTAAAAGAGCGCTGGCATCCG
GTTCAGGTCGCTGGCGCTCCTTTCTGGACGTCTGAGTGGGACAGTAAAGCATTAGCGCCTTATCGACAGTTTTTGCAAAA
AAACTCTGAAGAGAAGGAAGCCAATTATTTTCGGAATTTGATAAAACGAACCTGGCCTGAAGACATAAAAAGAAAGATAA
AACCTGATTCTTTGCTCATATTAATTCCGGCATTTACGGTGAGTCAGTTAACGCAGGCATTTCGGATTGGATTACTTATT
TATCTTCCCTTTCTGGCTATTGACCTGCTTATTTCAAATATACTGCTGGCTATGGGGATGATGATGGTGTCGCCGATGAC
CATTTCATTACCGTTTAAGCTGCTAATATTTTTACTGGCAGGCGGTTGGGATCTGACACTGGCGCAATTGGTACAGAGCT
TTTCATGA

Upstream 100 bases:

>100_bases
ACACGTTGGTATCTTTGCAAAAATACAGCGTAAACCTGATAAGAAAAATAATATGCGAACAATATAATAGCGTTCCAGGT
CGTGTCATGAGAGATACAGT

Downstream 100 bases:

>100_bases
ATGATTCTGAATTGACGCAATTTGTAACGCAACTTTTATGGATCGTCCTTTTTACGTCTATGCCGGTAGTGTTGGTGGCA
TCGGTAGTTGGTGTCATCGT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHP
VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS

Sequences:

>Translated_215_residues
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHP
VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI
YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
>Mature_214_residues
SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPV
QVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIY
LPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS

Specific function: Plays A Role In The Flagellum-Specific Transport System. [C]

COG id: COG4790

COG function: function code U; Type III secretory pathway, component EscR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family

Homologues:

Organism=Escherichia coli, GI1788259, Length=212, Percent_Identity=39.1509433962264, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): YSCR_SALTY (P74890)

Other databases:

- EMBL:   X99944
- EMBL:   AE006468
- RefSeq:   NP_460384.1
- GeneID:   1252937
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1419
- HOGENOM:   HBG414116
- OMA:   VIIIPAF
- ProtClustDB:   PRK12797
- BioCyc:   STYP99287:STM1419-MONOMER
- GO:   GO:0009405
- InterPro:   IPR005838
- InterPro:   IPR005773
- PRINTS:   PR01302
- TIGRFAMs:   TIGR01102

Pfam domain/function: PF00813 FliP

EC number: NA

Molecular weight: Translated: 24094; Mature: 23963

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS01060 FLIP_1; PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc986ee8)-; HASH(0xc9b5578)-; HASH(0xe948ddc)-; HASH(0xc3c0ab8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
HHHCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCH
>Mature Secondary Structure 
SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
HHHCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609