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The map label for this gene is ssaS

Identifier: 16764770

GI number: 16764770

Start: 1499388

End: 1499654

Strand: Direct

Name: ssaS

Synonym: STM1420

Alternate gene names: 16764770

Gene position: 1499388-1499654 (Clockwise)

Preceding gene: 16764769

Following gene: 16764771

Centisome position: 30.87

GC content: 41.95

Gene sequence:

>267_bases
ATGAATGATTCTGAATTGACGCAATTTGTAACGCAACTTTTATGGATCGTCCTTTTTACGTCTATGCCGGTAGTGTTGGT
GGCATCGGTAGTTGGTGTCATCGTAAGCCTTGTTCAGGCCTTGACTCAAATACAGGACCAAACGCTACAGTTCATGATTA
AATTATTGGCAATTGCAATAACCTTAATGGTCAGCTACCCATGGCTTAGCGGTATCCTGTTGAATTATACCCGGCAGATA
ATGTTACGAATTGGAGAGCATGGTTGA

Upstream 100 bases:

>100_bases
TGGTGTCGCCGATGACCATTTCATTACCGTTTAAGCTGCTAATATTTTTACTGGCAGGCGGTTGGGATCTGACACTGGCG
CAATTGGTACAGAGCTTTTC

Downstream 100 bases:

>100_bases
ATGGCACAACAGGTAAATGAGTGGCTTATTGCATTGGCTGTGGCTTTTATTCGACCATTGAGCCTTTCTTTATTACTTCC
CTTATTAAAAAGTGGCAGTT

Product: type III secretion system apparatus protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI
MLRIGEHG

Sequences:

>Translated_88_residues
MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI
MLRIGEHG
>Mature_88_residues
MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI
MLRIGEHG

Specific function: Part of a type III secretion system

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSAS_SALTY (P74891)

Other databases:

- EMBL:   X99944
- EMBL:   AE006468
- RefSeq:   NP_460385.1
- GeneID:   1252938
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1420
- HOGENOM:   HBG729002
- OMA:   WLGSEVL
- ProtClustDB:   PRK15350
- BioCyc:   STYP99287:STM1420-MONOMER
- InterPro:   IPR002191
- InterPro:   IPR006306
- PRINTS:   PR00952
- TIGRFAMs:   TIGR01403

Pfam domain/function: PF01313 Bac_export_3

EC number: NA

Molecular weight: Translated: 9877; Mature: 9877

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe7137f8)-; HASH(0xe4aed34)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLMVSYPWLSGILLNYTRQIMLRIGEHG
HHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLMVSYPWLSGILLNYTRQIMLRIGEHG
HHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9023191; 11677609