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The map label for this gene is ycfS [H]

Identifier: 16764570

GI number: 16764570

Start: 1297782

End: 1298747

Strand: Reverse

Name: ycfS [H]

Synonym: STM1215

Alternate gene names: 16764570

Gene position: 1298747-1297782 (Counterclockwise)

Preceding gene: 16764571

Following gene: 16764568

Centisome position: 26.74

GC content: 56.31

Gene sequence:

>966_bases
ATGTTCAACAATACGCGACTCTCTCGCTGGTGGGCGTTGCTTGCGCTTACCGCGACCATCATGCTTGCCCTTCCCGCGCA
GGCGAATACGTGGCCTCTTCCGCCCCCCGGCAGTCGACTGGTGGGAGAAAATAAATTCCATGTCGTTGAAGACGACGGCG
GCTCGCTGGAGGCGATCGCCAAAAAATATAACGTGGGCTTTTTAGCCCTGTTACAGGCCAACCCCGGCATTGATCCTTAT
GTGCCACGCGCAGGCAGCGTGCTAACGATTCCGCTGCAAACGCTGCTACCGGACGCGCCACGTGAAGGTATCGTCATTAA
CCTCGCGGAATTACGGCTTTACTATTATCAACCGGGGAAAAATACGGTCACGGTCTACCCTATCGGGATTGGCCAACTGG
GCGGCGATACCCTGACGCCAACGATGGTGACGACCATTTCGGATAAACGCGCCAATCCAACCTGGACGCCGACCGCCAAT
ATTCGCGCCCGTTATAAAGCGCAAGGTATCGATCTCCCCGCCGTGGTGCCTGCCGGTCCCGATAACCCAATGGGACATCA
CGCGATTCGTTTAGCGGCCTACGGCGGCGTCTATCTGTTACATGGCACGAATGCCGATTTTGGCATTGGTATGCGCGTCA
GTTCCGGCTGTATCCGTCTGCGCGACGGTGATATAGAGACATTGTTCCGTCAGGTCACGCCGGGAACCAAAGTGAATATT
ATCAATACGCCGATTAAAGCCTCGGTGGAGCCAGGCGGCGTGCGACTGGTGGAAGTTCATCAGCCGCTGTCTAAAAATAT
AGGCGACGATCCGCAGGTGTTGCCGATTGTGCTGAATGGCCCGATGCAGGCCTTTAAGGACGCGCCGCAGACCGATGCTG
CGGTGATGGAACATGTTATGGAAGTGCGTTCCGGAATGCCGGTGGATGTAACCCGTCAAGCAGAGGCGAAACCGCAGTCG
CTGTAA

Upstream 100 bases:

>100_bases
ATTCTTTGCACTTCCCTGCAGTTCCAGACACAGCCAACCGCCATAATTCTTATTTCCTCTTTTATAAAAATAACCACATA
ATAATCATGGGTTTATTATA

Downstream 100 bases:

>100_bases
GCGTGAATAGCTGACCGACAAAAAAGCCTCGCGATGCATCGCGAGGCTTTTTCTTTTTATTGTGGCAATCGCAGCGGCAT
TAATGAGGGTTAATGCTTAC

Product: periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPY
VPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTAN
IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
INTPIKASVEPGGVRLVEVHQPLSKNIGDDPQVLPIVLNGPMQAFKDAPQTDAAVMEHVMEVRSGMPVDVTRQAEAKPQS
L

Sequences:

>Translated_321_residues
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPY
VPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTAN
IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
INTPIKASVEPGGVRLVEVHQPLSKNIGDDPQVLPIVLNGPMQAFKDAPQTDAAVMEHVMEVRSGMPVDVTRQAEAKPQS
L
>Mature_321_residues
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPY
VPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTAN
IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
INTPIKASVEPGGVRLVEVHQPLSKNIGDDPQVLPIVLNGPMQAFKDAPQTDAAVMEHVMEVRSGMPVDVTRQAEAKPQS
L

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=321, Percent_Identity=84.4236760124611, Blast_Score=540, Evalue=1e-155,
Organism=Escherichia coli, GI1787968, Length=303, Percent_Identity=50.1650165016502, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI1787040, Length=308, Percent_Identity=48.7012987012987, Blast_Score=282, Evalue=2e-77,
Organism=Escherichia coli, GI1788299, Length=302, Percent_Identity=47.682119205298, Blast_Score=270, Evalue=9e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 34584; Mature: 34584

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIA
CCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGIDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTANIRARYKAQGIDLPAVVPAGP
CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCCHHHHHHHCCCCCEEEE
INTPIKASVEPGGVRLVEVHQPLSKNIGDDPQVLPIVLNGPMQAFKDAPQTDAAVMEHVM
EECCCEECCCCCCEEEEEECCCHHHCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHH
EVRSGMPVDVTRQAEAKPQSL
HHHCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIA
CCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGIDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTANIRARYKAQGIDLPAVVPAGP
CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCCHHHHHHHCCCCCEEEE
INTPIKASVEPGGVRLVEVHQPLSKNIGDDPQVLPIVLNGPMQAFKDAPQTDAAVMEHVM
EECCCEECCCCCCEEEEEECCCHHHCCCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHH
EVRSGMPVDVTRQAEAKPQSL
HHHCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]