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The map label for this gene is ycfQ [H]

Identifier: 16764568

GI number: 16764568

Start: 1296551

End: 1297186

Strand: Reverse

Name: ycfQ [H]

Synonym: STM1213

Alternate gene names: 16764568

Gene position: 1297186-1296551 (Counterclockwise)

Preceding gene: 16764570

Following gene: 16764559

Centisome position: 26.71

GC content: 53.46

Gene sequence:

>636_bases
ATGACAACGGATACCACGAGTTGCGCGAAGAAAAGCCGTGGCCGACCAAAAGTGTTCGACAGGGAAGCCGCGCTTGATAA
GGCCATGACTCTCTTCTGGCAGCACGGCTATGAAGCAACTTCGCTTGCCGATCTCGTAGAGGCTACCGGGGCGAAAGCGC
CTACTCTCTATGCGGAATTCACTAACAAAAAAGGATTATTTCGCGCTGTCCTGGATCGCTACATCACTCGCTTTGCCTCA
AAACACGAAGCCCAGCTCTTTTGTGAAGAGAAAAGCGTAGAATCGGCGCTGGAAGATTACTTCACAGAAATTGCCGCCTG
CTTTACCAGTACAGACACGCCGGCTGGCTGCTTTATGATTAATACGTCCGCCACCCTGGCCGCCTCCTCGCGCGATATCG
CCCGCACGGTAAAATCACGCCACGCCATGCAGGAACAGACGCTCATCCAGTTTCTGCGCCAACGTCAGGAGCGCGGTGAA
ATTCCGGCGCACTGTAACCCGCAGGCGCTCGCAGAATATATAAACTGTATTTTACAGGGAATGTCGATCAGCGCCCGTGA
AGGTGCCACCTTCGAACAACTGATGCAAATTACGCGTACGACTCTGCGCATCTGGCCTGAACTGATCAAGTCCTGA

Upstream 100 bases:

>100_bases
GTGAATAGAATTGATTTATTTTTCTAATGAATACTCTGGAGCCAGAAGTGGTTTGTTTTTATAATAGAGAGACCGCTCTT
TAAACAGGTACAACGGCATC

Downstream 100 bases:

>100_bases
ACGACGCGGCTTCGGATAAAAAAAAGCCCCTCAGCCTGAGCGAATGAGGGGCTAACTTGCAGAGTACAGCTTTTTTATGC
TTTGTTATTCAGAACCAGTT

Product: transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKKGLFRAVLDRYITRFAS
KHEAQLFCEEKSVESALEDYFTEIAACFTSTDTPAGCFMINTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGE
IPAHCNPQALAEYINCILQGMSISAREGATFEQLMQITRTTLRIWPELIKS

Sequences:

>Translated_211_residues
MTTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKKGLFRAVLDRYITRFAS
KHEAQLFCEEKSVESALEDYFTEIAACFTSTDTPAGCFMINTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGE
IPAHCNPQALAEYINCILQGMSISAREGATFEQLMQITRTTLRIWPELIKS
>Mature_210_residues
TTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKKGLFRAVLDRYITRFASK
HEAQLFCEEKSVESALEDYFTEIAACFTSTDTPAGCFMINTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGEI
PAHCNPQALAEYINCILQGMSISAREGATFEQLMQITRTTLRIWPELIKS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=210, Percent_Identity=80, Blast_Score=356, Evalue=1e-100,
Organism=Escherichia coli, GI87082397, Length=187, Percent_Identity=31.5508021390374, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23693; Mature: 23562

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEF
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHH
TNKKGLFRAVLDRYITRFASKHEAQLFCEEKSVESALEDYFTEIAACFTSTDTPAGCFMI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
NTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGEIPAHCNPQALAEYINCILQG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
MSISAREGATFEQLMQITRTTLRIWPELIKS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEF
CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHH
TNKKGLFRAVLDRYITRFASKHEAQLFCEEKSVESALEDYFTEIAACFTSTDTPAGCFMI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
NTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGEIPAHCNPQALAEYINCILQG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
MSISAREGATFEQLMQITRTTLRIWPELIKS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]