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The map label for this gene is ymdB

Identifier: 16764503

GI number: 16764503

Start: 1233013

End: 1233552

Strand: Direct

Name: ymdB

Synonym: STM1147

Alternate gene names: 16764503

Gene position: 1233013-1233552 (Clockwise)

Preceding gene: 16764502

Following gene: 39546310

Centisome position: 25.38

GC content: 55.19

Gene sequence:

>540_bases
ATGACATCACGTCTTCAGGTCATACAGGGTGATATCACTCAACTTAGCGTCGATGCGATTGTGAATGCCGCTAACGCATC
ATTAATGGGCGGCGGTGGCGTAGACGGCGCGATTCATCGCGCGGCGGGGCCGGCATTGCTGGACGCCTGTAAACTCATCC
GTCAGCAACAGGGCGAATGTCAGACGGGACATGCGGTTATCACGCCTGCTGGCAAGCTTTCGGCAAAGGCGGTTATTCAC
ACAGTGGGGCCCGTCTGGCGAGGCGGCGAACACCAGGAAGCTGAGCTACTCGAAGAGGCATACCGGAATTGTTTGCTGCT
TGCCGAGGCGAATCACTTTCGTTCCATCGCTTTTCCGGCAATCAGTACCGGCGTTTATGGCTATCCACGCGCCCAGGCCG
CTGAAGTCGCCGTCAGGACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGAACAGGTATACTTTGTCTGTTATGAT
GAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCCTGA

Upstream 100 bases:

>100_bases
GAGTACCGTTAACGGCGGTGTCATAGATATAAAAAGAGCGACTCTGTTGAAAGCCCTGCTGTACACTTTGCAGATAAGGT
GAGACAAAGGGGGGGGGGTT

Downstream 100 bases:

>100_bases
TAAAACACGCCTGGAGCGTGCCGTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTCGCGCTGGATAACA
GTCTGGACGCTTTTGCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIH
TVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYD
EETARLYARLLTQQGDDPA

Sequences:

>Translated_179_residues
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIH
TVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYD
EETARLYARLLTQQGDDPA
>Mature_178_residues
TSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHT
VGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDE
ETARLYARLLTQQGDDPA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=177, Percent_Identity=45.7627118644068, Blast_Score=154, Evalue=3e-38,
Organism=Homo sapiens, GI13569840, Length=160, Percent_Identity=46.25, Blast_Score=136, Evalue=9e-33,
Organism=Homo sapiens, GI154813199, Length=168, Percent_Identity=39.8809523809524, Blast_Score=113, Evalue=8e-26,
Organism=Homo sapiens, GI20336746, Length=172, Percent_Identity=33.1395348837209, Blast_Score=111, Evalue=3e-25,
Organism=Homo sapiens, GI93141018, Length=175, Percent_Identity=30.8571428571429, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI93141020, Length=175, Percent_Identity=30.8571428571429, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI4758496, Length=175, Percent_Identity=30.8571428571429, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI8923920, Length=176, Percent_Identity=30.1136363636364, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI207450721, Length=165, Percent_Identity=35.7575757575758, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI8923143, Length=170, Percent_Identity=34.7058823529412, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371718, Length=140, Percent_Identity=32.8571428571429, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371710, Length=140, Percent_Identity=32.8571428571429, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371706, Length=140, Percent_Identity=32.8571428571429, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371716, Length=140, Percent_Identity=32.8571428571429, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371714, Length=140, Percent_Identity=32.8571428571429, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371712, Length=140, Percent_Identity=32.8571428571429, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI165377137, Length=174, Percent_Identity=30.4597701149425, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1787283, Length=177, Percent_Identity=76.271186440678, Blast_Score=284, Evalue=3e-78,
Organism=Caenorhabditis elegans, GI17538214, Length=148, Percent_Identity=52.027027027027, Blast_Score=125, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24586353, Length=159, Percent_Identity=32.7044025157233, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMDB_SALTI (P67342)

Other databases:

- EMBL:   AL627269
- EMBL:   AE014613
- PIR:   AD0636
- ProteinModelPortal:   P67342
- SMR:   P67342
- PRIDE:   P67342
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t1773
- KEGG:   sty:STY1184
- HOGENOM:   HBG682503
- OMA:   ARHVIHT
- ProtClustDB:   PRK00431
- BioCyc:   SENT209261:T1773-MONOMER
- BioCyc:   SENT220341:STY1184-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 19196; Mature: 19065

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGEC
CCCCHHHECCCHHHHHHHHHHHHCCCCEECCCCCCHHHHHHCCHHHHHHHHHHHHHCCCC
QTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPA
CCCCEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCHHHHCHH
ISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQQGDDPA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGEC
CCCHHHECCCHHHHHHHHHHHHCCCCEECCCCCCHHHHHHCCHHHHHHHHHHHHHCCCC
QTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPA
CCCCEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCHHHHCHH
ISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQQGDDPA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504