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The map label for this gene is ymdC [H]

Identifier: 39546310

GI number: 39546310

Start: 1233488

End: 1234975

Strand: Direct

Name: ymdC [H]

Synonym: STM1148.S

Alternate gene names: 39546310

Gene position: 1233488-1234975 (Clockwise)

Preceding gene: 16764503

Following gene: 16764506

Centisome position: 25.39

GC content: 53.56

Gene sequence:

>1488_bases
ATGATGAAGAAACTGCCCGGCTTTACGCAAGATTACTTACTCAGCAAGGCGACGACCCTGCCTGATAAAACACGCCTGGA
GCGTGCCGTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTCGCGCTGGATAACAGTCTGGACGCTTTTG
CCGCCCGCTACCGCCTGACCGAAATGGCGGCGCGGACGCTGGATGTGCAGTATTATATTTGGGAAGACGATATGTCCGGG
CGGCTGCTCTTTTCGGTACTGCTGTCGGCGGCGAAGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCC
TGGTCTGGATGATACGTTGCGCTTGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCTTTCTCTTTTCGTA
CGCTACGCGCGCTGGGATATTTGACGGATTTTGCGCGGCTGAATCGGCGGATGCACAATAAAAGTTACACTGCCGACGGC
GTAGTGACGCTGGTCGGTGGGCGCAACATCGGCGATGCCTATTTCGGCGCTGGCGAGGAGCCGCTATTTTCCGATCTGGA
CGTGATGGCCATTGGCCCGGTGGTCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGTTCAGTGTCGACAT
TGCAGCAAGTATTATCCCTTTCTGAGCAGGAACTGACGCAGCGTATCGAACTTCCCGAATCCTGGTATAACGATGAGATC
ACCCGCCGTTATCTGCATAAGCTGGAAACCAGCCAGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGC
AAAAACACGCTTGCTTAGCGATGACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTTCCGCAGCGATTAT
TTGACGTGATGGGGTCGCCGACGGAGCGTATCGACATTATTTCCGCTTACTTTGTCCCTACGCGCGCAGGCGTGGCGCAG
TTGCTTAATCTGGTCAGGAAAGGCGTGAAGATCGCCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCA
CGCAGGGTACGCGCGCTGGCGCAAGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCGACCCGCGAACATG
AAACCGCCGTACATGATCGCGGACTCACCGGGAACTCAGGTTCCAGCTTACATGCTAAAACGTTCAGTATTGATGGTAGT
AAGGTGTTTATCGGGTCGCTTAATTTTGATCCCCGTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGA
AACGCTGGCGACGCTTATCCATAAGCGTTTTACACAGAGCCAACGCGATGCGGCCTGGCAACTGCGGCTGGATCGCTGGG
GACGAATTAACTGGATCGATCGTCAGCAAGAAGAGGAAAAGGTGTTAAAGAAAGAACCCGCTACGCGTTTCTGGCAACGA
GTTCTGGTACGGTTGGCGGCAATTTTACCTGTGGAATGGTTGCTGTGA

Upstream 100 bases:

>100_bases
TATGGCTATCCACGCGCCCAGGCCGCTGAAGTCGCCGTCAGGACGGTTTCAGATTTTATTACCCGTTACGCTCTGCCTGA
ACAGGTATACTTTGTCTGTT

Downstream 100 bases:

>100_bases
ACCCACGCGCGGAAAACTACCCGATCGTGGCGCGACTTTCTCGTTTTACCGGCGGTTTACCTGAAAAGAGAAATTTCAGG
AGCGGGATGCGTAAATGAAT

Product: phospholipase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MMKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGILALDNSLDAFAARYRLTEMAARTLDVQYYIWEDDMSG
RLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADG
VVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSEQELTQRIELPESWYNDEI
TRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPTERIDIISAYFVPTRAGVAQ
LLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRGLTGNSGSSLHAKTFSIDGS
KVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQQEEEKVLKKEPATRFWQR
VLVRLAAILPVEWLL

Sequences:

>Translated_495_residues
MMKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGILALDNSLDAFAARYRLTEMAARTLDVQYYIWEDDMSG
RLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADG
VVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSEQELTQRIELPESWYNDEI
TRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPTERIDIISAYFVPTRAGVAQ
LLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRGLTGNSGSSLHAKTFSIDGS
KVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQQEEEKVLKKEPATRFWQR
VLVRLAAILPVEWLL
>Mature_495_residues
MMKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGILALDNSLDAFAARYRLTEMAARTLDVQYYIWEDDMSG
RLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADG
VVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSEQELTQRIELPESWYNDEI
TRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPTERIDIISAYFVPTRAGVAQ
LLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRGLTGNSGSSLHAKTFSIDGS
KVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQQEEEKVLKKEPATRFWQR
VLVRLAAILPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=471, Percent_Identity=81.9532908704883, Blast_Score=791, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=401, Percent_Identity=23.9401496259352, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56349; Mature: 56349

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGILALDNSLDAFAARYRLT
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
EMAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHP
HHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHCCCC
NIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEE
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCCCC
PLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSEQELTQRIELPESWYNDEI
CCCCCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHCCHHH
TRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSP
HHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
TERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRY
HHHHHEEHHEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHC
GVELYELKPTREHETAVHDRGLTGNSGSSLHAKTFSIDGSKVFIGSLNFDPRSTLLNTEM
CCEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCHHHHCCCCC
GFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQQEEEKVLKKEPATRFWQR
CEEECHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHH
VLVRLAAILPVEWLL
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MMKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGILALDNSLDAFAARYRLT
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
EMAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHP
HHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHCCCC
NIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEE
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCCCC
PLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSEQELTQRIELPESWYNDEI
CCCCCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHCCHHH
TRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSP
HHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
TERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRY
HHHHHEEHHEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHC
GVELYELKPTREHETAVHDRGLTGNSGSSLHAKTFSIDGSKVFIGSLNFDPRSTLLNTEM
CCEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCHHHHCCCCC
GFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQQEEEKVLKKEPATRFWQR
CEEECHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHH
VLVRLAAILPVEWLL
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]