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The map label for this gene is yccA [H]

Identifier: 16764444

GI number: 16764444

Start: 1174268

End: 1174927

Strand: Reverse

Name: yccA [H]

Synonym: STM1085

Alternate gene names: 16764444

Gene position: 1174927-1174268 (Counterclockwise)

Preceding gene: 16764445

Following gene: 16764443

Centisome position: 24.19

GC content: 52.58

Gene sequence:

>660_bases
ATGGATCGTATCATTACATCATCGCGTGATCGTAGCTCGCTACTGAGTACGCACAAAGTACTGCGCAACACCTATTTTCT
GTTGAGCCTGACGCTGGCTTTATCCGCAATTACCGCGACAGCCAGTACGGTACTGATGCTGCCCTCCCCCGGCCTGATTC
TGACGCTGGTCGGTATGTATGGGCTGATGTTCCTGACCTATAAAACCGCCAATAAGCCGGTCGGTATCCTGTCTGCTTTT
GCGTTTACCGGCTTCCTCGGCTATATCCTGGGCCCGATTCTTAACGCCTATCTGTCAGCAGGCATGGGCGATGTCATTGG
CCTGGCGCTGGGTGGAACCGCGTTAGTATTTTTCTGCTGCTCCGCTTACGTTCTGACCACCCGTAAGGATATGTCTTTCC
TGGGCGGTATGTTAATGGCCGGGATCGTCGTCGTGCTGATTGGTATGGTGGCGAATATTTTCCTGCAACTGCCTGCATTG
CACCTGGCGATTAGCGCGGTGTTTATCCTGATTTCCTCGGGCGCTATCCTGTATGAAACCAGTAACATCATTCACGGCGG
TGAAACCAACTATATTCGTGCGACCGTCAGTCTGTACGTTTCGCTGTACAACATCTTTGTCAGCCTGCTCAGCATTCTGG
GCTTCGCCAGCCGCGACTAA

Upstream 100 bases:

>100_bases
AACGTAAACGAATGCGTAAAGATGGGTAAAACCACTGGGTGACAGTGACTGTTTTTATTATTCTCCTTTATTAATTACAT
CTGTCATAAGAGAGTGACTA

Downstream 100 bases:

>100_bases
TCGACATTCCCCTCTTCCAGCCCTGCTTATGCAGGGCTTTATTTTTTGCTACACTGCCGTCCGTGTTGATTACGCAGTGA
AACGTTATGTTGATCTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLALSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAF
AFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Sequences:

>Translated_219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLALSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAF
AFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
>Mature_219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLALSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAF
AFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=219, Percent_Identity=94.9771689497717, Blast_Score=409, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23314; Mature: 23314

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLALSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPVGILSAFAFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILYET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLALSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPVGILSAFAFTGFLGYILGPILNAYLSAGMGDVIGLALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILYET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]