| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is stfQ [H]
Identifier: 16764409
GI number: 16764409
Start: 1136476
End: 1138914
Strand: Direct
Name: stfQ [H]
Synonym: STM1049
Alternate gene names: 16764409
Gene position: 1136476-1138914 (Clockwise)
Preceding gene: 39546309
Following gene: 16764410
Centisome position: 23.4
GC content: 57.61
Gene sequence:
>2439_bases ATGCCAGTACTTATTTCCGGCGTACTGAAGGATGGTACGGGAACGCCGGTACAGAACTGCACCATTCAGCTGAAGGCCTG CCGGACCAGTACGACGGTGGTCGTGAATACGGTGGCATCAGAAAATCCGGATGACGCCGGGCGCTACAGCATGGATGTGG AGCAGGGGCAGTACACTGTCACGCTCCTGGTGGACGGGTATCCCCCGTCACATGCCGGAGTTATTACGGTTTACGATGAT TCAAAGCCGGGCACCCTGAATGATTTTCTGGGGGCCATGACAGAAGACGACGTCCGCCCGGAGGCGCTGCGGCGTTTTGA GGCGATGGTGGAAGAAGTTGCCCGCCAGGCATCGGAGGCATCGCGGAATGCCACCGCCGCAGGGCAGGCATCTGAACAGG CGCAGACATCAGCAGGTCAGGCATCGGAAAGCGCCACGGCAGCAGTGAATGCAGCCGGAGCGGCAGAAGCATCAGCCACA CAGGCAGCCTCATCCGCAGCATCTGCGGAGAGCAGCGCAGGTACGGCGACCACAAAAGCCGGGGAGGCATCAGCCAGCGC GGCGTCGGCTGACACAGCCAGAACGGCGGCAGCCGCATCGGCAGCCGCAGCGAAAACATCTGAAGCGAATGCAGATGCCT CCCGTACTGCCGCCGGCGATTCAGCTGCTGCCGCAGCCGCCAGCGCGACGGCGGCGCAGACATCAGCAGAGCGCGCCGGA GCATCCGAAACCGCCGCGAAGACGTCAGAAACGCAGGCGGCTTCCAGTGCCGGTGATGCAGGTGCGTCAGCCACTGCGGC GGCAGCGTCGGAAAAGGCGGCAGCCGCATCGGCAGCCGCAGCGAAAACATCTGAGACAAATGCAGCAACGTCAGCAAGTA CAGCAGCGGCCAGCGCAACAGCCGCCTCGTCATCAGCATCGGAGGCATCCACTCACGCCGCCGCATCTGATACCAGCGCA TCACTGGCGGCGCAAAGCAGTACTGCTGCCGGAGCAGCAGCCACCAGAGCAGAAGATGCCGCAAAACGGGCAGAAGATAT CGCGGACGTGATTTCCCTGGAAGATGCCAGCCTGACGAAAAAAGGTATCGTTAAGTTAAGCAGCGCCACGGACAGTGACA GCGAAGCGCTGGCAGCCACGCCAAAGGCGGTCCATGCTGTCATGGACGAGGTACAGACCAAAGCGCCGCTGGACAGTCCG GCACTGACTGGTACGCCAACAGCACCAACTCCGGAAACCGCAGCTGCAGGTATTGAAATTGCCACGGCAGCGTTTGTGGC TGCGAAAGTGGCGCAGTTGGTTGGTTCTGCGCCGGAAACGCTGGACACGCTGAAAGAACTGGCTGACGCGCTGGGTAACG ATCCGAACTTTGCCACCACTGTACTGAATAAACTGGCGGGCAAGCAGCCGCTGGACGATACACTGACGGCGCTGTCAGGA AAAAGCGTTGACGGTCTTATCGAATACGTTGGTTTACGGGAAACCATAAATCACGCCGCCGATGCATTACTAAAATCACA GAACGGTGGCGATATTCCGGAAAAGCCGCTGTTTGTACAAAATATCGGAGCGCTCCCTGCATCAGGTACGGCTGTTGCAG CGAACAGACTGGCATCACGCGGCGCGCTTCCGGCACTGACTGGTGCGACAAGAGGCAGCGATAGCGGCCTGATAATGGGC GAGGTCTACAACAATGGCTATCCGACGCAATACGGAAATATTTTACGTCTGACCGGAACTGGTGATGGGGAAATCCTCAT TGGCTGGAGCGGGACAAACGGTGCGCCAGCGCCCGCATATATTCGCAGTCATCGAGATACCGCCGATGCTGAGTGGTCCG AATGGGCGATGCTCTACACCTCACTAAATCCGCCACCGAATTCGTATCCAGTAGGTGCGGCGATAGCATGGCCGTCTGAT GCTACCCCAGCCGGTTACGCCCTGATGCAGGGGCAATCGTTTGATAAATCTGCTTACCCGTTACTGGCTATAGCGTATCC GTCCGGCATTATCCCTGACATGCGGGGCTGGACAATAAAGGGTAAGCCCATCAGTGGACGTGCTGTACTGTCGCAAGAAA TGGACGGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACTGACTTAGGGACAAAATCTACCTCATCCTTTGAT TACGGCACGAAATCGACCAATACCACGGGCAATCATACTCACCAGTTCGGCGGTTATATCAATTCATACTGGGGAGATTC CAATCACACCTCATTTCAGCCTGGAGGTGGTGCATGGACACAGGCCGCTGGCGACCATGCACATACAGTTTATATCGGAG GACATGAGCACACCATGTATATAGGTCCACACGGACACGTCGTTATTGTGGACGCAGACGGTAATGCGGAAACCACGGTT AAAAACATTGCATTTAACTACATAGTGAGGCTGGCATAA
Upstream 100 bases:
>100_bases AGTGTTCTCTGCCGGCATATTTACGTGACCCGGATAATCAGTGCTGAGATGTGAATGAATCTGAAGCCTGCCTGCGGGCG GGCTTTTTTATGGAGGCAAT
Downstream 100 bases:
>100_bases TGACTTTTAAAATGAGCGAACAGGCGCAGACAATTAAAATTTTCAATCTGCGTTCAGATACTAACGAATTTATTGGTGCA GGTGATGCGTATATTCCGCC
Product: tail fiber protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 811
Protein sequence:
>812_residues MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVDGYPPSHAGVITVYDD SKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAG ASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSA SLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSP ALTGTPTAPTPETAAAGIEIATAAFVAAKVAQLVGSAPETLDTLKELADALGNDPNFATTVLNKLAGKQPLDDTLTALSG KSVDGLIEYVGLRETINHAADALLKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGATRGSDSGLIMG EVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTSLNPPPNSYPVGAAIAWPSD ATPAGYALMQGQSFDKSAYPLLAIAYPSGIIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHSARAQDTDLGTKSTSSFD YGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTV KNIAFNYIVRLA
Sequences:
>Translated_812_residues MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVDGYPPSHAGVITVYDD SKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAG ASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSA SLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSP ALTGTPTAPTPETAAAGIEIATAAFVAAKVAQLVGSAPETLDTLKELADALGNDPNFATTVLNKLAGKQPLDDTLTALSG KSVDGLIEYVGLRETINHAADALLKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGATRGSDSGLIMG EVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTSLNPPPNSYPVGAAIAWPSD ATPAGYALMQGQSFDKSAYPLLAIAYPSGIIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHSARAQDTDLGTKSTSSFD YGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTV KNIAFNYIVRLA >Mature_811_residues PVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVDGYPPSHAGVITVYDDS KPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASATQ AASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAGA SETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSAS LAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSPA LTGTPTAPTPETAAAGIEIATAAFVAAKVAQLVGSAPETLDTLKELADALGNDPNFATTVLNKLAGKQPLDDTLTALSGK SVDGLIEYVGLRETINHAADALLKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGATRGSDSGLIMGE VYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTSLNPPPNSYPVGAAIAWPSDA TPAGYALMQGQSFDKSAYPLLAIAYPSGIIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHSARAQDTDLGTKSTSSFDY GTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVK NIAFNYIVRLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tail fiber family [H]
Homologues:
Organism=Escherichia coli, GI1787829, Length=320, Percent_Identity=59.0625, Blast_Score=333, Evalue=2e-92, Organism=Escherichia coli, GI87081892, Length=246, Percent_Identity=58.5365853658537, Blast_Score=257, Evalue=2e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011083 - InterPro: IPR005003 [H]
Pfam domain/function: PF07484 Collar; PF03335 Phage_fiber [H]
EC number: NA
Molecular weight: Translated: 81426; Mature: 81295
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTV CCEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCEEE TLLVDGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEA EEEECCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASATQAASSAASAESSAGTATTKA HCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC GEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAG CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCC ASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKTSETNAATSASTAAASAT CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH AASSSASEASTHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTK HCCCCCHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH KGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSPALTGTPTAPTPETAAAGIEI HHCEEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHH ATAAFVAAKVAQLVGSAPETLDTLKELADALGNDPNFATTVLNKLAGKQPLDDTLTALSG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHCC KSVDGLIEYVGLRETINHAADALLKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASR CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCCCCCHHHHHHHHHHC GALPALTGATRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAY CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCHH IRSHRDTADAEWSEWAMLYTSLNPPPNSYPVGAAIAWPSDATPAGYALMQGQSFDKSAYP HHCCCCCCCCCHHHEEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCC LLAIAYPSGIIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHSARAQDTDLGTKSTSSFD EEEEECCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC YGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMY CCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE IGPHGHVVIVDADGNAETTVKNIAFNYIVRLA ECCCCCEEEEECCCCCHHHHHHHHEEEHEECC >Mature Secondary Structure PVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTV CEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCEEE TLLVDGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEA EEEECCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASATQAASSAASAESSAGTATTKA HCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC GEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAG CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCC ASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKTSETNAATSASTAAASAT CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH AASSSASEASTHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTK HCCCCCHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH KGIVKLSSATDSDSEALAATPKAVHAVMDEVQTKAPLDSPALTGTPTAPTPETAAAGIEI HHCEEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHH ATAAFVAAKVAQLVGSAPETLDTLKELADALGNDPNFATTVLNKLAGKQPLDDTLTALSG HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHCC KSVDGLIEYVGLRETINHAADALLKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASR CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCCCCCHHHHHHHHHHC GALPALTGATRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAY CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCHH IRSHRDTADAEWSEWAMLYTSLNPPPNSYPVGAAIAWPSDATPAGYALMQGQSFDKSAYP HHCCCCCCCCCHHHEEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCC LLAIAYPSGIIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHSARAQDTDLGTKSTSSFD EEEEECCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC YGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMY CCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE IGPHGHVVIVDADGNAETTVKNIAFNYIVRLA ECCCCCEEEEECCCCCHHHHHHHHEEEHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]