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The map label for this gene is rzpD [H]

Identifier: 16764389

GI number: 16764389

Start: 1115680

End: 1116159

Strand: Direct

Name: rzpD [H]

Synonym: STM1029

Alternate gene names: 16764389

Gene position: 1115680-1116159 (Clockwise)

Preceding gene: 16764388

Following gene: 16764390

Centisome position: 22.97

GC content: 54.37

Gene sequence:

>480_bases
ATGTTTGTTGGCCTGTTGCTTGTCTCGCTAATTGTTGCCGGTCGGCTGGCAAATCACTACCGAAATAACGCCATCACCTA
CAAAGAGCAGCGCGATACCGTTACTCATAGGCTGACGCTGGCGAACGCGACAATTACCGACATGACTAAGCGCCAGCGTG
ACGTTGCCGCCCTCGATGAAAAATACACGAAGGAATTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGTT
GCCGCTGGCCGCCGTCGCCTGTACGTCAACGCAACATGCCCCGCAGTGCCGACAGGTAAATCCACCTCCACCGCCCGCAT
GGATAATGCAGCCAGCCCCAGACTGGCAGACTCCGCTCAACGGGATTATTTCGCCCTCAAAGAGCGAGTGAAGACGATGC
AAAAGCAACTGGAAGGGGCGCAGGCGTACATTCGCACCCAATGCCACGGTAATGCAGGAAAAACTAGTAACCAATGGTGA

Upstream 100 bases:

>100_bases
TGCGCTGGAATAAGGCTGGTGGCAAAGTACTGAACGGGCTTACCCGTCGGCGTGAGGCGGAGCGTGCTCTGTTCCTGTCA
TGATGTTCAACTGGAAAACG

Downstream 100 bases:

>100_bases
CTGTATTAAAAAGGTACTCCCGGGCAGGGGGCGCCACGGGTGGCTTCGGGCTCGCGGGAATCGGCTGATTTTTGATTTTT
TAGTCTCTGTCAGCACTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDEKYTKELADAKAENDALRDDV
AAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW

Sequences:

>Translated_159_residues
MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDEKYTKELADAKAENDALRDDV
AAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW
>Mature_159_residues
MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDEKYTKELADAKAENDALRDDV
AAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=131, Percent_Identity=70.2290076335878, Blast_Score=182, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 17702; Mature: 17702

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDE
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQ
HHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
RDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDE
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQ
HHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
RDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]