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The map label for this gene is ycaC [H]

Identifier: 16764311

GI number: 16764311

Start: 1027679

End: 1028356

Strand: Reverse

Name: ycaC [H]

Synonym: STM0950

Alternate gene names: 16764311

Gene position: 1028356-1027679 (Counterclockwise)

Preceding gene: 16764312

Following gene: 16764310

Centisome position: 21.17

GC content: 53.83

Gene sequence:

>678_bases
ATGTCAAGTCCTGCTAATTTTAATGGTTTGCGCCCGGTAATTGATGTTAACGATTCCGTGATGCTTTTAATCGATCATCA
AAGCGGTCTTTTCCAGACCGTAGGCGATATGCCAATGCCGGAATTACGCGCTCGCGCCGCGGCGTTGGCGAAGATGGCGA
CGTTAGCGAAAATGCCGGTCATTACCACGGCATCCGTACCGCAAGGTCCGAACGGCCCTCTGATCCCGGAGATCCACGCT
AATGCGCCACATGCGCAGTACATTGCGCGCAAAGGTGAAATTAACGCCTGGGATAACGAAGATTTCGTTAAGGCGGTAAA
AGCGACGGGTCGTAAGACGCTGATCATTGCCGGGACGATTACCAGCGTGTGCATGGCATTCCCGGCCATTAGCGCGGTAG
CGGAAGGTTATAAGGTATTTGCCGTGATCGACGCATCCGGTACCTACAGTAAGATGGCGCAGGAGATCACCCTGGCGCGT
ATCGTACAGGCTGGCGTCGTACCGATGGATACTGCCGCAGTCGCCTCTGAGCTGCAAGGCACCTGGAACCGTGAAGACGC
CGCCGCGTGGGCCGACGTTTATACTCAGGTATTCCCGGCCTATCAACTGCTGATAGAAAGCTACAGCAAAGCGCAGGATG
TGGTGAAAAACAACGAAATGTTGGATTCACAGCGTTAA

Upstream 100 bases:

>100_bases
GGCCCATTTGTTATGAACACGAAACAAGAGATCGCAGAAGCAGTTCGCGATTTCAACTCCGGCCGTTTTGGCCAAATCTG
AAAACATGAAGGAGAATACG

Downstream 100 bases:

>100_bases
TTTGCCTCCCCGCGCCAGTTTGGGCGGGGATTATGTCTATTGCATGAGCAAACGACAGTGAATATGTAAATTCTGCTTGA
CCGTTTTAGCGCAACTCCCT

Product: SlsA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHA
NAPHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLAR
IVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR

Sequences:

>Translated_225_residues
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHA
NAPHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLAR
IVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR
>Mature_224_residues
SSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHAN
APHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARI
VQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=196, Percent_Identity=47.9591836734694, Blast_Score=191, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 24165; Mature: 24034

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPV
CCCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCE
ITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTI
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEHHH
TSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARIVQAGVVPMDTAAVASELQG
HHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
TWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPV
CCCCCCCCCCCEEECCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCE
ITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTI
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEHHH
TSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARIVQAGVVPMDTAAVASELQG
HHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
TWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]