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The map label for this gene is ycdD

Identifier: 16764289

GI number: 16764289

Start: 1001442

End: 1002017

Strand: Direct

Name: ycdD

Synonym: STM0927

Alternate gene names: 16764289

Gene position: 1001442-1002017 (Clockwise)

Preceding gene: 16764288

Following gene: 16764292

Centisome position: 20.62

GC content: 47.22

Gene sequence:

>576_bases
ATGCCTTTTAAAATGAGCAGCAAAGCGCAGACTATTAAAATTTTCAATCTGCGTTCAGATACAAACGAATTTATTGGGGC
AGGTGATGCGTATATCCCGCCGCACACTGGATTACCGGCAAACTGTACTGATATAGCCCCTCCTGATATTCCCTCCAGTC
ATATTGCTGTATTTGACGCTGAAACCCAGACGTGGAACCTGAAAGAAGACCATCGCGGAGAAACGGTATACGACACAACA
ACCGGTAATCAGATGTATATCTCCGAACCCGGCCCGTTGCCCGAAAATGTCACATCAGTTTCACCAGGTGGTGGATACAA
AAAATGGGATAGTAAGGCTAAGGCCTGGGTGAATGATGAAGGTGCGGAGGTTGCAGCCAGACTTCGTGAAGCTGAAGGAA
CCAAAAGCCGTCTTTTGCAAATGGCATCGGGGAAAATTGCGCCGCTTCAGGATGCGGTTGATCTTGGAATTGCAACAGAT
GATGAAAAAGCGCAGCTCGACGAATGGAAAAAATACAGGGTACTGGTAAACCGGGTTGATACCTCAAATCCTGATTGGCC
GGAACAACCAGTCTGA

Upstream 100 bases:

>100_bases
ATATCGGCCCACACGGACACGTCGTTATTGTGGACGCAGATGGTAATGCGGAAACCACGGTTAAAAACATTGCATTTAAC
TACATAGTGAGGCTGGCATA

Downstream 100 bases:

>100_bases
TAAAAAATATAGCTATGTAGTAGAGACTGCTGCTATATGTTATATAGCAGCAATGGCTATTTTTTGATGTTTAATTGTAT
GATTTTATTACTGGTAAATG

Product: phage tail assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MPFKMSSKAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPSSHIAVFDAETQTWNLKEDHRGETVYDTT
TGNQMYISEPGPLPENVTSVSPGGGYKKWDSKAKAWVNDEGAEVAARLREAEGTKSRLLQMASGKIAPLQDAVDLGIATD
DEKAQLDEWKKYRVLVNRVDTSNPDWPEQPV

Sequences:

>Translated_191_residues
MPFKMSSKAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPSSHIAVFDAETQTWNLKEDHRGETVYDTT
TGNQMYISEPGPLPENVTSVSPGGGYKKWDSKAKAWVNDEGAEVAARLREAEGTKSRLLQMASGKIAPLQDAVDLGIATD
DEKAQLDEWKKYRVLVNRVDTSNPDWPEQPV
>Mature_190_residues
PFKMSSKAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPSSHIAVFDAETQTWNLKEDHRGETVYDTTT
GNQMYISEPGPLPENVTSVSPGGGYKKWDSKAKAWVNDEGAEVAARLREAEGTKSRLLQMASGKIAPLQDAVDLGIATDD
EKAQLDEWKKYRVLVNRVDTSNPDWPEQPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfa family

Homologues:

Organism=Escherichia coli, GI1787637, Length=193, Percent_Identity=61.139896373057, Blast_Score=242, Evalue=1e-65,
Organism=Escherichia coli, GI2367120, Length=193, Percent_Identity=60.6217616580311, Blast_Score=240, Evalue=4e-65,
Organism=Escherichia coli, GI1787402, Length=191, Percent_Identity=34.0314136125654, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDD_SALTY (P40784)

Other databases:

- EMBL:   AE006468
- EMBL:   M55342
- RefSeq:   NP_459904.1
- GeneID:   1252446
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0927
- NMPDR:   fig|99287.1.peg.894
- HOGENOM:   HBG758252
- OMA:   QVYISEL
- ProtClustDB:   CLSK2753123
- BioCyc:   STYP99287:STM0927-MONOMER
- InterPro:   IPR003458

Pfam domain/function: PF02413 Caudo_TAP

EC number: NA

Molecular weight: Translated: 21002; Mature: 20870

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFKMSSKAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPSSHIAVFDA
CCCCCCCCCEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
ETQTWNLKEDHRGETVYDTTTGNQMYISEPGPLPENVTSVSPGGGYKKWDSKAKAWVNDE
CCCEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
GAEVAARLREAEGTKSRLLQMASGKIAPLQDAVDLGIATDDEKAQLDEWKKYRVLVNRVD
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
TSNPDWPEQPV
CCCCCCCCCCC
>Mature Secondary Structure 
PFKMSSKAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPSSHIAVFDA
CCCCCCCCEEEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
ETQTWNLKEDHRGETVYDTTTGNQMYISEPGPLPENVTSVSPGGGYKKWDSKAKAWVNDE
CCCEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
GAEVAARLREAEGTKSRLLQMASGKIAPLQDAVDLGIATDDEKAQLDEWKKYRVLVNRVD
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
TSNPDWPEQPV
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 1602967; 7920643