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The map label for this gene is araC [H]

Identifier: 16763494

GI number: 16763494

Start: 121640

End: 122485

Strand: Direct

Name: araC [H]

Synonym: STM0104

Alternate gene names: 16763494

Gene position: 121640-122485 (Clockwise)

Preceding gene: 16763490

Following gene: 16763495

Centisome position: 2.5

GC content: 53.9

Gene sequence:

>846_bases
ATGGCTGAAACGCAAAATGATCCGCTATTGCCGGGATATTCATTTAATGCCCATCTGGTCGCCGGGCTGACGCCAATTGA
AGCGAATGGATATCTGGATTTTTTTATCGATCGTCCGTTGGGCATGAAGGGATATATTCTTAACCTGACCATCCGCGGAG
AGGGCGTCATTAATAATAATGGCGAGCAGTTTGTCTGTCGGCCTGGCGATATATTATTGTTTCCGCCGGGCGAGATTCAT
CACTATGGACGGCATCCGGACGCCAGCGAGTGGTATCACCAGTGGGTTTATTTCCGGCCTCGCGCCTACTGGCAGGAGTG
GCTGACCTGGCCGACAATCTTTGCCCAGACAGGATTTTTCCGCCCGGACGAGGCGCGCCAGCCGCATTTCAGCGAACTGT
TCGGGCAGATCATCAGCGCCGGGCAAGGGGAAGGTCGCTATTCTGAGCTACTGGCGATCAATCTGCTGGAGCAGTTGTTG
CTCAGACGTATGGCGGTAATTAATGAGTCGTTGCACCCGCCGATGGATAGCCGTGTGCGCGATGCCTGCCAGTATATCAG
CGACCATCTGGCGGACAGCCATTTTGATATCGCCAGCGTCGCCCAGCATGTCTGCCTGTCGCCCTCCCGGTTATCACATC
TGTTCCGCCAGCAGTTAGGCATTAGCGTATTGAGCTGGCGCGAAGATCAGCGTATCAGCCAGGCGAAACTTCTGCTTAGC
ACTACGCGAATGCCGATAGCGACCGTTGGGCGCAATGTTGGATTTGACGATCAGCTCTATTTTTCGCGGGTATTTAAAAA
ATGCACCGGGGCAAGTCCTAGCGAGTTCAGGGCCGGATGTGAATAA

Upstream 100 bases:

>100_bases
GCTTTCATCAAGCGCAAAGTCTTGCGGAGACGGAAGCTCTGTCGTCCTGGTCGATATGGACAATTTGTTTCTTCTCTGAA
CATCGGGGGGTAGAGAAATC

Downstream 100 bases:

>100_bases
AAAGTGAATGATGTGTCCACAAAGATGTCATAAGCCGTAACTATTCGGATAATTGACGGCTTGACGAAGGGGGACGGGGT
AAGCAGAATCCCTGCTTCAT

Product: DNA-binding transcriptional regulator AraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIH
HYGRHPDASEWYHQWVYFRPRAYWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLL
LRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS
TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE

Sequences:

>Translated_281_residues
MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIH
HYGRHPDASEWYHQWVYFRPRAYWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLL
LRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS
TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE
>Mature_280_residues
AETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHH
YGRHPDASEWYHQWVYFRPRAYWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLLL
RRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLST
TRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=281, Percent_Identity=92.5266903914591, Blast_Score=552, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32071; Mature: 31940

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGEGVINNN
CCCCCCCCCCCCCCCCCEEEECCCEECCCCEEEEEECCCCCCCEEEEEEEEECCEEECCC
GEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWQEWLTWPTIFAQTGFF
CCEEEECCCCEEEECCCHHCCCCCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCC
RPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLLLRRMAVINESLHPPMDSRVR
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS
HHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH
TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE
HCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure 
AETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGEGVINNN
CCCCCCCCCCCCCCCCEEEECCCEECCCCEEEEEECCCCCCCEEEEEEEEECCEEECCC
GEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWQEWLTWPTIFAQTGFF
CCEEEECCCCEEEECCCHHCCCCCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCC
RPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLLLRRMAVINESLHPPMDSRVR
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS
HHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH
TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE
HCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]