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The map label for this gene is rpiR [C]

Identifier: 218930064

GI number: 218930064

Start: 3372309

End: 3373187

Strand: Reverse

Name: rpiR [C]

Synonym: YPO3017

Alternate gene names: 218930064

Gene position: 3373187-3372309 (Counterclockwise)

Preceding gene: 218930065

Following gene: 218930063

Centisome position: 72.48

GC content: 49.03

Gene sequence:

>879_bases
GTGAAAACTGGTGCTCCCCGTTTTAAGCCAGGTAAAATTCTTGATGCCTTGGGTGCGATGCAAAATAGCCTGACTCGTTC
TGCTCAGCGTATTGCTGCGTATATTTTGGCGCAACCGGCTCAGGTTACCCAATTATCTATTGCTGATCTTTCGGCACTCA
CACAGGCCGGTGAAGCGACCATTATTCGTTTCTGTCGGACACTGGGTTATAAAGGGTTTCAGGATTTCAAAATGGACCTG
GCCATTGAAGTGGCCACCCGCCATAACAGTGAAAACAGCCTGTTAGATGCCGATGTCCAAGAGGGTGACGATACGCTGGC
GATCGGCAGCAAATTACAATCCGCTATCAATAATGTCTTATCTGAAACACTTAATTTGCTTTCTATTGAGAGTGTTGAAC
AGGTGGTCAAAGTGCTGCGCCCTGCGGATCGCATCTGTATTTTTGGTGTTGGCTCCTCGGGGATCACTGCGGAAGATGCC
AAAGGCAAACTAATGCGCATCGGCCTGCGGGTTGATGCTGCGACAAATAATCACTTCATGTATATGCAAGCCTCTCTTAT
GAACCCGGGTGATGTTGCCATTGGTATCAGTCATTCGGGGACCTCGGCTGAAACTGTGCAAGCGCTCAAATTGGCAAAAG
AGGCAGGGGCGACGACAGTAGCGTTGACGCATAATATGGGGTCACGGATCACTGAATTAGCCGATTATGTCCTGATCAAT
GGTAACCGGCAGGGGCAGTTGCAGGGGGATTCCATCGGCACAAAAATCGCACAACTGTTTGTGTTGGATCTGATTTACGC
CTTATTGGTCAAAGCTGATCCGGCGCAGGCGGAGAGTATTAAACGTAAAACGACGCAAGCGGTTAGCCAAAATGGGTGA

Upstream 100 bases:

>100_bases
ACACCTCCACCATTGATCTTCACGAAACAGGTCAACTATGTAATGATGCGCCTCAAATATATCATCCTGTCTGTCATTTT
ATTTCCCTTGAGGTGTCCGC

Downstream 100 bases:

>100_bases
CCGGTAATCTACCCGCCATACGTCAAGCTGCATGTGCATAGATGGCCTTCGTGATTCGGCCCGTCCATGGGCCTCGCCTC
TCCGCTGCAAGCCGCGTTCC

Product: putative rpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKGFQDFKMDL
AIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESVEQVVKVLRPADRICIFGVGSSGITAEDA
KGKLMRIGLRVDAATNNHFMYMQASLMNPGDVAIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLIN
GNRQGQLQGDSIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG

Sequences:

>Translated_292_residues
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKGFQDFKMDL
AIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESVEQVVKVLRPADRICIFGVGSSGITAEDA
KGKLMRIGLRVDAATNNHFMYMQASLMNPGDVAIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLIN
GNRQGQLQGDSIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG
>Mature_292_residues
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEATIIRFCRTLGYKGFQDFKMDL
AIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVLSETLNLLSIESVEQVVKVLRPADRICIFGVGSSGITAEDA
KGKLMRIGLRVDAATNNHFMYMQASLMNPGDVAIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLIN
GNRQGQLQGDSIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=271, Percent_Identity=26.9372693726937, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1788767, Length=263, Percent_Identity=27.7566539923954, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082130, Length=251, Percent_Identity=28.2868525896414, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788159, Length=213, Percent_Identity=30.0469483568075, Blast_Score=98, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31102; Mature: 31102

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEAT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH
IIRFCRTLGYKGFQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVL
HHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEECHHHCCCCHHHHHHHHHHHHHHHH
SETLNLLSIESVEQVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFM
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEE
YMQASLMNPGDVAIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLIN
EEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEEC
GNRQGQLQGDSIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADLSALTQAGEAT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH
IIRFCRTLGYKGFQDFKMDLAIEVATRHNSENSLLDADVQEGDDTLAIGSKLQSAINNVL
HHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEECHHHCCCCHHHHHHHHHHHHHHHH
SETLNLLSIESVEQVVKVLRPADRICIFGVGSSGITAEDAKGKLMRIGLRVDAATNNHFM
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEE
YMQASLMNPGDVAIGISHSGTSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLIN
EEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEEC
GNRQGQLQGDSIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]