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The map label for this gene is ygbI [C]

Identifier: 218928391

GI number: 218928391

Start: 1396615

End: 1397430

Strand: Direct

Name: ygbI [C]

Synonym: YPO1237

Alternate gene names: 218928391

Gene position: 1396615-1397430 (Clockwise)

Preceding gene: 218928390

Following gene: 218928392

Centisome position: 30.01

GC content: 48.28

Gene sequence:

>816_bases
ATGATGATGATCCCTGAACAGCGTCGTGACTTTATCTACCGCTACGTGCATGAGCAGAATGTCGCATCCTTCATGGATCT
GGCCGAGTTGATGAACGTGTCACACATGACGGTGCGCAGGGATATCCAGATACTGGAAGCCGAGGGGAAAGTGGTGGCAA
TCAACGGCGGTGTGAAGCTGAACAATCTGCTCAAGCTTGAGTTGGCGTACAGTGAAAAAGCGTCGCTGAATCATGAGTTG
AAGCAGAATATCGGTGTGCTGGCGGCCATGTTGATTGAACCTGGGCAGACACTGTATCTTGATGCTGGTACCACGCTTTT
CGAAGTTGCCAAAGCGGTCGCGGCCAGTAACTGTTTTAACCTGACCGTGGTGACCAATGATTTCACTATCAGTGGTTATC
TGATGGACATGCCGCATATTAGCCTTTACCACACGGGAGGGTTAGTTGATCGCCGTAATCGTTCCTGTTTGGGAAATAGC
GCCGCCAATTTTCTTAACACTATCAATATTGATGTGGCATTCCTCAGTAGCAGTTCTTGGGATATTGCGCGAGGCATGTC
AACGCCCAGTGAAGGTAAAGCCATGGTGAAGGCGGCTGTCATGCGCGCATCACGGCGTAATATTTTGGTCTCGGACAGCA
GTAAATTTGGTAAATATGGCATGTTCCCTATCTGTAATTTACAGGCGCTGACTGACATTATTTCAGATGGCAATCTGCCA
CTTGTCGCACAGAAACAGATCAAAGAGTCCGGCGTTAAATTACATCTGGTCAACAAAGAGGTAAGAGCCCCATGCTCAAA
TTCGCAGCCAATCTAA

Upstream 100 bases:

>100_bases
CGGCACGGCTCTATTTTCTGATAAAGCCTTATGATTACAGTCAATTAACAACCTCATCCATTGATGAGTTGGCTCAATCG
TACCGCAACAAAATAGGATA

Downstream 100 bases:

>100_bases
CGTGGTTATTTACCGAGGTGCCATTTTTACAGCGCTTTGCTTTGGCCGCTAAGGCTGGGTTCCCGGCAGTAGAGTGCCTT
TTCCCCTATCAGGAACAGAT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MMMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHEL
KQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNS
AANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLP
LVAQKQIKESGVKLHLVNKEVRAPCSNSQPI

Sequences:

>Translated_271_residues
MMMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHEL
KQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNS
AANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLP
LVAQKQIKESGVKLHLVNKEVRAPCSNSQPI
>Mature_271_residues
MMMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKLNNLLKLELAYSEKASLNHEL
KQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNS
AANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLP
LVAQKQIKESGVKLHLVNKEVRAPCSNSQPI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=258, Percent_Identity=42.6356589147287, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI1789519, Length=255, Percent_Identity=29.8039215686275, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=28.8537549407115, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790753, Length=257, Percent_Identity=28.4046692607004, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=26.4, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082344, Length=247, Percent_Identity=25.1012145748988, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787063, Length=211, Percent_Identity=29.3838862559242, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787540, Length=258, Percent_Identity=23.2558139534884, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788069, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789170, Length=220, Percent_Identity=26.8181818181818, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29843; Mature: 29843

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCEEEEECCCCEEEEECCEEE
NNLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFN
CCEEEEEEECCCCHHCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEE
LTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSAANFLNTINIDVAFLSSSSW
EEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCC
DIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLP
HHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEECCHHHHHHHHCCCCCC
LVAQKQIKESGVKLHLVNKEVRAPCSNSQPI
EEEHHHHHHCCCEEEEECHHHCCCCCCCCCC
>Mature Secondary Structure
MMMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGKVVAINGGVKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCEEEEECCCCEEEEECCEEE
NNLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYLDAGTTLFEVAKAVAASNCFN
CCEEEEEEECCCCHHCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEE
LTVVTNDFTISGYLMDMPHISLYHTGGLVDRRNRSCLGNSAANFLNTINIDVAFLSSSSW
EEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCC
DIARGMSTPSEGKAMVKAAVMRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLP
HHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEECCHHHHHHHHCCCCCC
LVAQKQIKESGVKLHLVNKEVRAPCSNSQPI
EEEHHHHHHCCCEEEEECHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]