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The map label for this gene is ygbM [H]

Identifier: 218928392

GI number: 218928392

Start: 1397448

End: 1398200

Strand: Direct

Name: ygbM [H]

Synonym: YPO1238

Alternate gene names: 218928392

Gene position: 1397448-1398200 (Clockwise)

Preceding gene: 218928391

Following gene: 218928393

Centisome position: 30.03

GC content: 44.62

Gene sequence:

>753_bases
GTGCCATTTTTACAGCGCTTTGCTTTGGCCGCTAAGGCTGGGTTCCCGGCAGTAGAGTGCCTTTTCCCCTATCAGGAACA
GATCGCCGATGTGCAACAAGCACAAAAAGCGAGCGGCATTCCGGTAGTTTTGATCAATGCCCCTGCGGGAGAATGGGAAA
ATGGCCAGCGGGGACTCGCCTCACTGCCCGATGCTGGCGAGCCGTTTCGCCACAGTGTGCGGCTGGCGCGTGAATATGCC
GTGGCATTGGGATGTAAACAGATTCATATCATGGCTGGCAATAGAGAAGAGAGTATCACTTTCGATGAGCAATATGCGTT
ACTGATTGAACGATTACGTTATGCTGCAGACTATTTAATGGCTGACAATATCAGGGTGCTTATTGAACCTTTAAATAATG
ACAATATGCCGGGTTATTTTATTTCATCATTTCCGCTGGCGGAAAAAATAATTCACCAGTGTGAGAGAAAGAATATTTTT
TTACAGTTTGATGTTTACCATTGCCAAAAAATACACGGCAACCTATGGGCCAACCTACAACATTACTGGCCGTTAATTTC
ACATATACAGATAGCCTCGGTACCTGAACGGCATGAACCGAATAAAGGCGAGGTCAACTACCCTTGGTTATTCCAACAAC
TGGTAATAAAAAATTATCCAGGCTGGATTGGATGTGAATATCAACCCGAAAATGAAACATTCTCAGGGTTGGGATGGTTG
GGAAAAAATAAAAATATCAAGGCGTTTTCATAG

Upstream 100 bases:

>100_bases
AACAGATCAAAGAGTCCGGCGTTAAATTACATCTGGTCAACAAAGAGGTAAGAGCCCCATGCTCAAATTCGCAGCCAATC
TAACGTGGTTATTTACCGAG

Downstream 100 bases:

>100_bases
CGCCGCTGGCCACTGTATAGCTAACTGTGATAGGCCACACTTCGGTGTGGCTGTCTTTTTTCATCTTATATAAAAAAACA
TTCACGCGGTCCGCAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MPFLQRFALAAKAGFPAVECLFPYQEQIADVQQAQKASGIPVVLINAPAGEWENGQRGLASLPDAGEPFRHSVRLAREYA
VALGCKQIHIMAGNREESITFDEQYALLIERLRYAADYLMADNIRVLIEPLNNDNMPGYFISSFPLAEKIIHQCERKNIF
LQFDVYHCQKIHGNLWANLQHYWPLISHIQIASVPERHEPNKGEVNYPWLFQQLVIKNYPGWIGCEYQPENETFSGLGWL
GKNKNIKAFS

Sequences:

>Translated_250_residues
MPFLQRFALAAKAGFPAVECLFPYQEQIADVQQAQKASGIPVVLINAPAGEWENGQRGLASLPDAGEPFRHSVRLAREYA
VALGCKQIHIMAGNREESITFDEQYALLIERLRYAADYLMADNIRVLIEPLNNDNMPGYFISSFPLAEKIIHQCERKNIF
LQFDVYHCQKIHGNLWANLQHYWPLISHIQIASVPERHEPNKGEVNYPWLFQQLVIKNYPGWIGCEYQPENETFSGLGWL
GKNKNIKAFS
>Mature_249_residues
PFLQRFALAAKAGFPAVECLFPYQEQIADVQQAQKASGIPVVLINAPAGEWENGQRGLASLPDAGEPFRHSVRLAREYAV
ALGCKQIHIMAGNREESITFDEQYALLIERLRYAADYLMADNIRVLIEPLNNDNMPGYFISSFPLAEKIIHQCERKNIFL
QFDVYHCQKIHGNLWANLQHYWPLISHIQIASVPERHEPNKGEVNYPWLFQQLVIKNYPGWIGCEYQPENETFSGLGWLG
KNKNIKAFS

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=241, Percent_Identity=39.4190871369295, Blast_Score=178, Evalue=3e-45,
Organism=Homo sapiens, GI300068964, Length=225, Percent_Identity=37.7777777777778, Blast_Score=155, Evalue=5e-38,
Organism=Escherichia coli, GI1789095, Length=240, Percent_Identity=41.25, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1786718, Length=238, Percent_Identity=39.4957983193277, Blast_Score=194, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI17552022, Length=237, Percent_Identity=36.2869198312236, Blast_Score=159, Evalue=1e-39,
Organism=Drosophila melanogaster, GI17530883, Length=243, Percent_Identity=37.8600823045267, Blast_Score=161, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 28574; Mature: 28443

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFLQRFALAAKAGFPAVECLFPYQEQIADVQQAQKASGIPVVLINAPAGEWENGQRGLA
CCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
SLPDAGEPFRHSVRLAREYAVALGCKQIHIMAGNREESITFDEQYALLIERLRYAADYLM
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHH
ADNIRVLIEPLNNDNMPGYFISSFPLAEKIIHQCERKNIFLQFDVYHCQKIHGNLWANLQ
HCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCEEEEEEHHHHHHHHCHHHHHHH
HYWPLISHIQIASVPERHEPNKGEVNYPWLFQQLVIKNYPGWIGCEYQPENETFSGLGWL
HHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECEECCCCCCCCCEEEC
GKNKNIKAFS
CCCCCCCCCC
>Mature Secondary Structure 
PFLQRFALAAKAGFPAVECLFPYQEQIADVQQAQKASGIPVVLINAPAGEWENGQRGLA
CHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
SLPDAGEPFRHSVRLAREYAVALGCKQIHIMAGNREESITFDEQYALLIERLRYAADYLM
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHH
ADNIRVLIEPLNNDNMPGYFISSFPLAEKIIHQCERKNIFLQFDVYHCQKIHGNLWANLQ
HCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHCCEEEEEEHHHHHHHHCHHHHHHH
HYWPLISHIQIASVPERHEPNKGEVNYPWLFQQLVIKNYPGWIGCEYQPENETFSGLGWL
HHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECEECCCCCCCCCEEEC
GKNKNIKAFS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]