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The map label for this gene is dpa [H]

Identifier: 60623873

GI number: 60623873

Start: 1377316

End: 1378452

Strand: Reverse

Name: dpa [H]

Synonym: ST1370

Alternate gene names: 60623873

Gene position: 1378452-1377316 (Counterclockwise)

Preceding gene: 15921656

Following gene: 15921654

Centisome position: 51.15

GC content: 29.82

Gene sequence:

>1137_bases
ATAATTTGTTTTGATAAATTAAAAAAAGCATTTAATAATTTATTAGATAAAATAAAAGGAGAAAGCAAACCTGAAGAAGA
AAAGAAAGAAGAAACAAAACAAACCGCTCCAACTTTACAAATCGAAGAAGCAAAATCTCCTCGATTAGAAGAAACACAAA
CCCAACAAAAGCAGGAAATTACAAATCCTCCAGAAGGAGTTCAAATAGTAGAAAAAGAAGAGAAAAAAAATATAATTACC
ACAGAAGAAAAAAAATCTAGGTTTTCATTTTTTGATTTTATTAAATATAAAACTATTAAAGAAGAGGATATCCAGGATAT
ATTAGAGGAACTTAGATACCAACTACTAGAATCTGATGTTTCGTATGAGGTTACTGAAAAAATATTAGATGATTTGAAGA
ATGCAATAATTGGGAAAAAAGTCACTAGAAGTGAAGATTTAGAGGAGCTAGTTACTAATTCATTAAAAAAATCAATAGAA
GAAATATTAACAAAAAACCAGAGAATAGATCTAATAGAAGAAATAAGAAAAAGAAATAAGAAACCATATGTAATTGTTTT
CTTTGGAGTAAACGGAGTAGGAAAAACAACTACAATAGCAAAAGTAGCATATTTATTAAAGAAAAATAAAATTTCGTGTA
TAATCTCAGCCTCTGATACATTTAGAGCCGCAGCTCAGGAGCAACTTGCATATCACGCAAGCAAGTTAGAAATTCCAATA
GTAAAAGGAAAATATGGTGCTGATCCTGCATCTGTAGCTTTTGATGCTATTAATTCTGCAAAAAGTAGAAATATTGATGT
AGTACTAATCGATACTGCGGGGAGAATGCATATTGATGAAGATCTAGTATCTGAGTTAAAAAGAATTGTAAAAATAGCAA
AACCAGATTTACGAATTTTAGTTCTAGATTCATTAGCTGGGAATGACGCATTAGAACAAGCAAAATATTTTGAGAATAAT
GTAGGTTATGATGCCGTAATATTAACTAAAGTAGATGCAGATGCTAAAGGGGGTGTGATTCTATCCCTAGCATATGAATT
AAATAAGCCAGTAATATATTTAGGAGTCGGACAAGATTATGACAGTCTAATACCGTTTGATGCTGAATGGTTTATAAAAA
GGCTTTTTAGTAGTTAA

Upstream 100 bases:

>100_bases
TAGAAAAAGAATTAGCTAAATCTTTAGAAGCCTATAAAGAAATAGCTGACATACTTAATCAAGCACAACAACAATTGCAA
GCTCAACAAAATAAAGGTGG

Downstream 100 bases:

>100_bases
AGTTAATAACTAAACGTTTAACTATATCGTATATGAGTCTTTCACAAAGGTTAAAGAATTTAAGAGAAGATTGGAAAAGA
ATAATTTCCGTAGCTAAGAA

Product: signal recognition particle receptor protein

Products: NA

Alternate protein names: Docking protein; P41 [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MICFDKLKKAFNNLLDKIKGESKPEEEKKEETKQTAPTLQIEEAKSPRLEETQTQQKQEITNPPEGVQIVEKEEKKNIIT
TEEKKSRFSFFDFIKYKTIKEEDIQDILEELRYQLLESDVSYEVTEKILDDLKNAIIGKKVTRSEDLEELVTNSLKKSIE
EILTKNQRIDLIEEIRKRNKKPYVIVFFGVNGVGKTTTIAKVAYLLKKNKISCIISASDTFRAAAQEQLAYHASKLEIPI
VKGKYGADPASVAFDAINSAKSRNIDVVLIDTAGRMHIDEDLVSELKRIVKIAKPDLRILVLDSLAGNDALEQAKYFENN
VGYDAVILTKVDADAKGGVILSLAYELNKPVIYLGVGQDYDSLIPFDAEWFIKRLFSS

Sequences:

>Translated_378_residues
MICFDKLKKAFNNLLDKIKGESKPEEEKKEETKQTAPTLQIEEAKSPRLEETQTQQKQEITNPPEGVQIVEKEEKKNIIT
TEEKKSRFSFFDFIKYKTIKEEDIQDILEELRYQLLESDVSYEVTEKILDDLKNAIIGKKVTRSEDLEELVTNSLKKSIE
EILTKNQRIDLIEEIRKRNKKPYVIVFFGVNGVGKTTTIAKVAYLLKKNKISCIISASDTFRAAAQEQLAYHASKLEIPI
VKGKYGADPASVAFDAINSAKSRNIDVVLIDTAGRMHIDEDLVSELKRIVKIAKPDLRILVLDSLAGNDALEQAKYFENN
VGYDAVILTKVDADAKGGVILSLAYELNKPVIYLGVGQDYDSLIPFDAEWFIKRLFSS
>Mature_378_residues
MICFDKLKKAFNNLLDKIKGESKPEEEKKEETKQTAPTLQIEEAKSPRLEETQTQQKQEITNPPEGVQIVEKEEKKNIIT
TEEKKSRFSFFDFIKYKTIKEEDIQDILEELRYQLLESDVSYEVTEKILDDLKNAIIGKKVTRSEDLEELVTNSLKKSIE
EILTKNQRIDLIEEIRKRNKKPYVIVFFGVNGVGKTTTIAKVAYLLKKNKISCIISASDTFRAAAQEQLAYHASKLEIPI
VKGKYGADPASVAFDAINSAKSRNIDVVLIDTAGRMHIDEDLVSELKRIVKIAKPDLRILVLDSLAGNDALEQAKYFENN
VGYDAVILTKVDADAKGGVILSLAYELNKPVIYLGVGQDYDSLIPFDAEWFIKRLFSS

Specific function: Probably involved in the signal sequence recognition [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI23308697, Length=310, Percent_Identity=31.6129032258064, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI295424842, Length=310, Percent_Identity=31.6129032258064, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI4507215, Length=284, Percent_Identity=32.3943661971831, Blast_Score=148, Evalue=8e-36,
Organism=Homo sapiens, GI226371618, Length=237, Percent_Identity=33.3333333333333, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI89061728, Length=130, Percent_Identity=32.3076923076923, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI1789874, Length=266, Percent_Identity=43.2330827067669, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1788963, Length=284, Percent_Identity=31.6901408450704, Blast_Score=161, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI193206261, Length=303, Percent_Identity=35.6435643564356, Blast_Score=182, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17539958, Length=284, Percent_Identity=29.9295774647887, Blast_Score=133, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6320498, Length=318, Percent_Identity=33.3333333333333, Blast_Score=174, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6325345, Length=273, Percent_Identity=31.1355311355311, Blast_Score=149, Evalue=8e-37,
Organism=Drosophila melanogaster, GI24641198, Length=316, Percent_Identity=34.1772151898734, Blast_Score=187, Evalue=7e-48,
Organism=Drosophila melanogaster, GI17647949, Length=292, Percent_Identity=31.1643835616438, Blast_Score=146, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 42860; Mature: 42860

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICFDKLKKAFNNLLDKIKGESKPEEEKKEETKQTAPTLQIEEAKSPRLEETQTQQKQEI
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHC
TNPPEGVQIVEKEEKKNIITTEEKKSRFSFFDFIKYKTIKEEDIQDILEELRYQLLESDV
CCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
SYEVTEKILDDLKNAIIGKKVTRSEDLEELVTNSLKKSIEEILTKNQRIDLIEEIRKRNK
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
KPYVIVFFGVNGVGKTTTIAKVAYLLKKNKISCIISASDTFRAAAQEQLAYHASKLEIPI
CCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCEEEE
VKGKYGADPASVAFDAINSAKSRNIDVVLIDTAGRMHIDEDLVSELKRIVKIAKPDLRIL
ECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
VLDSLAGNDALEQAKYFENNVGYDAVILTKVDADAKGGVILSLAYELNKPVIYLGVGQDY
EEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCC
DSLIPFDAEWFIKRLFSS
CCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MICFDKLKKAFNNLLDKIKGESKPEEEKKEETKQTAPTLQIEEAKSPRLEETQTQQKQEI
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHC
TNPPEGVQIVEKEEKKNIITTEEKKSRFSFFDFIKYKTIKEEDIQDILEELRYQLLESDV
CCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
SYEVTEKILDDLKNAIIGKKVTRSEDLEELVTNSLKKSIEEILTKNQRIDLIEEIRKRNK
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
KPYVIVFFGVNGVGKTTTIAKVAYLLKKNKISCIISASDTFRAAAQEQLAYHASKLEIPI
CCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCEEEE
VKGKYGADPASVAFDAINSAKSRNIDVVLIDTAGRMHIDEDLVSELKRIVKIAKPDLRIL
ECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
VLDSLAGNDALEQAKYFENNVGYDAVILTKVDADAKGGVILSLAYELNKPVIYLGVGQDY
EEECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCC
DSLIPFDAEWFIKRLFSS
CCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658539; 8935656 [H]