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The map label for this gene is rhmD [H]

Identifier: 15922894

GI number: 15922894

Start: 2571888

End: 2573000

Strand: Direct

Name: rhmD [H]

Synonym: ST2561

Alternate gene names: 15922894

Gene position: 2571888-2573000 (Clockwise)

Preceding gene: 15922893

Following gene: 15922895

Centisome position: 95.44

GC content: 34.41

Gene sequence:

>1113_bases
ATGAAGGTTTCTATTTTACCAGCGTCAATACCTTATGTAGATAATCCTATGCCAGAATGGGTTGATGAGTGGGGAGTACA
ATTATTTACAAAAGTTAATTTAGGTGATTATGCTGGCTATGGTGAGGTTCTAATAGCTGGTAGTGGCATTATCTCAGCTT
ATATCGGTGTTTTTGAGGATCTAATTATTCCTTATTTAGAAAATGTAGAAGTTGTCTCAATAAATGAGGTAGTTGAAAAG
TTAGAGAAAATGTTATACTCTGCTGGTCTATGTAGTATAACTTTAGGTTCTATTAGTGGGGTTGAAACTGCATTATGGCA
TGTTTTTTCAAAGATGAGGAATATGAAAATTTATGAGTTCTTTGGAGGCAAGGTAAGGGATCGCGTCCCGGTTTATGCTA
GTTTTCCACGATATAAGAGCGTTGATGATATAGTAAGTGCAGTTAAGGTTGCAATTAATAGAGGCTTTACCCTTGTGAAG
CTACATCAACAACCTCAGATGATTGAGGATGCTTTGAAGAAAATTAGGGAGATTTTTGGTTTTGAAATTAAGATAGCTAT
TGATTTTAATTCTGCTTTTGATTACTCATCAGCATTATCATTTTTGAATAAGATCCACCGTTATGAGATTGAATGGTATG
AGGAACCGATTTATCCTCCAAACGATTACGATAATTTAAAGCGTTTAGCAGAAAAATTCCCAATATCTGCTGGGGAGAAT
GAATATACTATTAATAGCTTTAGGAAGTTGATTGAAAGTGGAATTGAATATGTGCAACCGGATATTTCTAAGATTGGTGG
TTACTTGAAAATGATTAAAGTTATTGATTTAGCCGAGAGTTACGGAGTAAAAGTCATGCCACATTTAAGGCCTCAGAGAT
CTGGAATAGCACTATTTCACACTCTACAACTTGCGTTAGCGAAAAGGAATATAGTTCAAGTTGAGTTCCCATTAGCTCAA
ATTCCTTCAGAACTGTTTAACGCTGAGTTCAATATAAACAATGGTTTAGTAAAGGTTCCAGAAGATGTTTCATTAAATGA
GGAAATACTACGCGAAAAATATAATTTCACTAGAAAACTAAGGATTTTGAAATTTGCTGATTTGGCAACATAA

Upstream 100 bases:

>100_bases
TAATTATGCTTTAAGGGTAATGAATGGAAGATTAACATCAGCAGAAGTACTTCAGCATGATGAATTCTCTCCTATAAAAT
TATACATAAGTGCATAAAAA

Downstream 100 bases:

>100_bases
TCTTAAATACTTTTTTTTCCTAGTTAATTATTGTGTCTTTATCACAATTGGCATATGAAAAGATCTTGAATTTAATTATA
AACGGCAAGTATAAACCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: RhamD [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MKVSILPASIPYVDNPMPEWVDEWGVQLFTKVNLGDYAGYGEVLIAGSGIISAYIGVFEDLIIPYLENVEVVSINEVVEK
LEKMLYSAGLCSITLGSISGVETALWHVFSKMRNMKIYEFFGGKVRDRVPVYASFPRYKSVDDIVSAVKVAINRGFTLVK
LHQQPQMIEDALKKIREIFGFEIKIAIDFNSAFDYSSALSFLNKIHRYEIEWYEEPIYPPNDYDNLKRLAEKFPISAGEN
EYTINSFRKLIESGIEYVQPDISKIGGYLKMIKVIDLAESYGVKVMPHLRPQRSGIALFHTLQLALAKRNIVQVEFPLAQ
IPSELFNAEFNINNGLVKVPEDVSLNEEILREKYNFTRKLRILKFADLAT

Sequences:

>Translated_370_residues
MKVSILPASIPYVDNPMPEWVDEWGVQLFTKVNLGDYAGYGEVLIAGSGIISAYIGVFEDLIIPYLENVEVVSINEVVEK
LEKMLYSAGLCSITLGSISGVETALWHVFSKMRNMKIYEFFGGKVRDRVPVYASFPRYKSVDDIVSAVKVAINRGFTLVK
LHQQPQMIEDALKKIREIFGFEIKIAIDFNSAFDYSSALSFLNKIHRYEIEWYEEPIYPPNDYDNLKRLAEKFPISAGEN
EYTINSFRKLIESGIEYVQPDISKIGGYLKMIKVIDLAESYGVKVMPHLRPQRSGIALFHTLQLALAKRNIVQVEFPLAQ
IPSELFNAEFNINNGLVKVPEDVSLNEEILREKYNFTRKLRILKFADLAT
>Mature_370_residues
MKVSILPASIPYVDNPMPEWVDEWGVQLFTKVNLGDYAGYGEVLIAGSGIISAYIGVFEDLIIPYLENVEVVSINEVVEK
LEKMLYSAGLCSITLGSISGVETALWHVFSKMRNMKIYEFFGGKVRDRVPVYASFPRYKSVDDIVSAVKVAINRGFTLVK
LHQQPQMIEDALKKIREIFGFEIKIAIDFNSAFDYSSALSFLNKIHRYEIEWYEEPIYPPNDYDNLKRLAEKFPISAGEN
EYTINSFRKLIESGIEYVQPDISKIGGYLKMIKVIDLAESYGVKVMPHLRPQRSGIALFHTLQLALAKRNIVQVEFPLAQ
IPSELFNAEFNINNGLVKVPEDVSLNEEILREKYNFTRKLRILKFADLAT

Specific function: Catalyzes the dehydration of L-rhamnonate to 2-keto-3- deoxy-L-rhamnonate (KDR) [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily [H]

Homologues:

Organism=Escherichia coli, GI226510960, Length=223, Percent_Identity=28.6995515695067, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI48994953, Length=297, Percent_Identity=27.6094276094276, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.90 [H]

Molecular weight: Translated: 42160; Mature: 42160

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSILPASIPYVDNPMPEWVDEWGVQLFTKVNLGDYAGYGEVLIAGSGIISAYIGVFED
CEEEEECCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHH
LIIPYLENVEVVSINEVVEKLEKMLYSAGLCSITLGSISGVETALWHVFSKMRNMKIYEF
HHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEH
FGGKVRDRVPVYASFPRYKSVDDIVSAVKVAINRGFTLVKLHQQPQMIEDALKKIREIFG
HCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC
FEIKIAIDFNSAFDYSSALSFLNKIHRYEIEWYEEPIYPPNDYDNLKRLAEKFPISAGEN
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCC
EYTINSFRKLIESGIEYVQPDISKIGGYLKMIKVIDLAESYGVKVMPHLRPQRSGIALFH
CEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHH
TLQLALAKRNIVQVEFPLAQIPSELFNAEFNINNGLVKVPEDVSLNEEILREKYNFTRKL
HHHHHHHHCCEEEEECCHHHCCHHHCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHH
RILKFADLAT
HHHHHHCCCC
>Mature Secondary Structure
MKVSILPASIPYVDNPMPEWVDEWGVQLFTKVNLGDYAGYGEVLIAGSGIISAYIGVFED
CEEEEECCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHH
LIIPYLENVEVVSINEVVEKLEKMLYSAGLCSITLGSISGVETALWHVFSKMRNMKIYEF
HHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEH
FGGKVRDRVPVYASFPRYKSVDDIVSAVKVAINRGFTLVKLHQQPQMIEDALKKIREIFG
HCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC
FEIKIAIDFNSAFDYSSALSFLNKIHRYEIEWYEEPIYPPNDYDNLKRLAEKFPISAGEN
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCC
EYTINSFRKLIESGIEYVQPDISKIGGYLKMIKVIDLAESYGVKVMPHLRPQRSGIALFH
CEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHH
TLQLALAKRNIVQVEFPLAQIPSELFNAEFNINNGLVKVPEDVSLNEEILREKYNFTRKL
HHHHHHHHCCEEEEECCHHHCCHHHCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHH
RILKFADLAT
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA