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The map label for this gene is ydhC [H]

Identifier: 15922895

GI number: 15922895

Start: 2573033

End: 2573674

Strand: Direct

Name: ydhC [H]

Synonym: ST2562

Alternate gene names: 15922895

Gene position: 2573033-2573674 (Clockwise)

Preceding gene: 15922894

Following gene: 15922901

Centisome position: 95.48

GC content: 31.46

Gene sequence:

>642_bases
GTGTCTTTATCACAATTGGCATATGAAAAGATCTTGAATTTAATTATAAACGGCAAGTATAAACCAGGGAATTTGCTTAA
GGAAGATGAATTGGCAAACACTCTTAATATTAGTAGGACACCTGTTAGAGAAGCTTTAGCTAGATTAGAGAGGGATGGTA
TTATAATAAAATCTGGGAAGTCGTATTCTGTTATTCCTTTATCAGCAGAAGATATAATTCAAATTTATGAAATTAGGATT
CCTTTAGAGGCTGAAGCAAGTAAGTTAGCTTCTATTAGGGGTACTGAGGAGGAGTTAAAGAAAATGTTAGACATTATAGA
AGAGATAAAAAGAGTTAAGGAGGATGCAGAACCTTTGACTTTAGCTGAACTCAATGGAAAACTTCATAGAACTATAAGTG
AAGCTTCCCATAATAAATTTCTGGCTGATATATTAGAGAATATAAGATTAAAATTAAAGATAGTTAGGGTAACACTTTTT
ACTAGTTTTCAGAGGAGAGAAGAAGAATTAAGAGAACACAGTGAAATTGTTACGGCTATTATAGAGAGGAATCCAGATAA
AGCTTATCAACTTATGAAGGAACATGAACTAAATGTTCTAGAATATGTAAAAAAGAATATTTTACCAATACTCTTTAGAT
GA

Upstream 100 bases:

>100_bases
TACTACGCGAAAAATATAATTTCACTAGAAAACTAAGGATTTTGAAATTTGCTGATTTGGCAACATAATCTTAAATACTT
TTTTTTCCTAGTTAATTATT

Downstream 100 bases:

>100_bases
GTTACTTTAACCGTCTCGGTAGAATATATCTTACTGTATACATTAATCTCTTCCTTTTAAAATCTCCTCTAACTTGTTTT
CTACTTATTAACATTTTAGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSLSQLAYEKILNLIINGKYKPGNLLKEDELANTLNISRTPVREALARLERDGIIIKSGKSYSVIPLSAEDIIQIYEIRI
PLEAEASKLASIRGTEEELKKMLDIIEEIKRVKEDAEPLTLAELNGKLHRTISEASHNKFLADILENIRLKLKIVRVTLF
TSFQRREEELREHSEIVTAIIERNPDKAYQLMKEHELNVLEYVKKNILPILFR

Sequences:

>Translated_213_residues
MSLSQLAYEKILNLIINGKYKPGNLLKEDELANTLNISRTPVREALARLERDGIIIKSGKSYSVIPLSAEDIIQIYEIRI
PLEAEASKLASIRGTEEELKKMLDIIEEIKRVKEDAEPLTLAELNGKLHRTISEASHNKFLADILENIRLKLKIVRVTLF
TSFQRREEELREHSEIVTAIIERNPDKAYQLMKEHELNVLEYVKKNILPILFR
>Mature_212_residues
SLSQLAYEKILNLIINGKYKPGNLLKEDELANTLNISRTPVREALARLERDGIIIKSGKSYSVIPLSAEDIIQIYEIRIP
LEAEASKLASIRGTEEELKKMLDIIEEIKRVKEDAEPLTLAELNGKLHRTISEASHNKFLADILENIRLKLKIVRVTLFT
SFQRREEELREHSEIVTAIIERNPDKAYQLMKEHELNVLEYVKKNILPILFR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789353, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787821, Length=204, Percent_Identity=24.5098039215686, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24583; Mature: 24452

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSQLAYEKILNLIINGKYKPGNLLKEDELANTLNISRTPVREALARLERDGIIIKSGK
CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCC
SYSVIPLSAEDIIQIYEIRIPLEAEASKLASIRGTEEELKKMLDIIEEIKRVKEDAEPLT
CEEEEEECHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
LAELNGKLHRTISEASHNKFLADILENIRLKLKIVRVTLFTSFQRREEELREHSEIVTAI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IERNPDKAYQLMKEHELNVLEYVKKNILPILFR
HHCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SLSQLAYEKILNLIINGKYKPGNLLKEDELANTLNISRTPVREALARLERDGIIIKSGK
CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCC
SYSVIPLSAEDIIQIYEIRIPLEAEASKLASIRGTEEELKKMLDIIEEIKRVKEDAEPLT
CEEEEEECHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
LAELNGKLHRTISEASHNKFLADILENIRLKLKIVRVTLFTSFQRREEELREHSEIVTAI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IERNPDKAYQLMKEHELNVLEYVKKNILPILFR
HHCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]