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The map label for this gene is dppB [H]

Identifier: 15922874

GI number: 15922874

Start: 2549444

End: 2550496

Strand: Direct

Name: dppB [H]

Synonym: ST2540

Alternate gene names: 15922874

Gene position: 2549444-2550496 (Clockwise)

Preceding gene: 15922872

Following gene: 15922875

Centisome position: 94.61

GC content: 35.61

Gene sequence:

>1053_bases
ATGATTATGGGTAGTTTAATTATGCAAAGTTCATTTTTGAAATTCGCGGTCAGAAGGGTTATAAACGGGATTGTGACATT
ACTACTTCTTATACTTTTTGTGTTTATTCTTATTCACGCTGCTGCCCCAAATCCAGCAGCCTTAGCCAGAATATATGCTG
GAAACCCTCACGCTCCTCCTACAGAAATAGATGAGATAATAAAAGAGTATAATCTTAACGCCCCACTCTACGTTCAATTT
GTGGATTACATAAAGGATATTTTTACTGGGAATTGGGGCATAGATCCTATATATAAGGTTCAAGAATCTTCTCTTTTATT
TCATTATTTGCCAATCAGTCTTCAAATTGTTATACCCGGTGATATTCTAGCAGCAATAATTGGAATATTAAGCGGTGCTG
TTGCTGCTGCAAACAGAGGGACTTTAAAAGATAGGTCTATAAAAGGTGTTTATTTATTAACTTGGGCTTCTCCCCCATTT
TTAGTTGCTCTAGTACTCCAACTAATTATAGCTTATTATTTAGGCTTATTACCACCTAACGGGACGGTTAATCCTTTATT
AAAAGCTCCACCCTCATATACACCATTCCCTATCTTAAATGCATTAATAGCTGGAGACTGGCCATATTTTATATCGGCAG
TAAGACACGCGGTGTTACCAGCAATTTCAATAGCTATAATCACATTCGGATTATTTACTAGGATAACAAGGTCGTCTATG
CTTGATGCAATGGAATCTGATTATACGAAATTGGCCTTTGCTAAAGGATTAAAGAGAAATTATGTAGTTTACAGAGTTGC
TTTGCGAAATAGCCTAATCCCAGTAATAACACTTATAGCACTGTTTTTTGGCTATTCCGTTGCTGGGGCAGTAATAATTG
AGGATATTTACCACTATTTGGGAATTGGTTATTTCATAACTCAAGCAATAGAAAGCTTAGATTACATAGCCGTTTTAGAT
TTTACGATAATTATTGGTATTGCTGTAATAATAGCCAACTTTATAGCTGATGTACTTTACGGTATTTTAGACCCAAGGGT
GAAATTAGAATGA

Upstream 100 bases:

>100_bases
CCTATTCATATTAGACCAATAAAAAGTTTCTAATTCTATTATTTAAATCTTATCAAACTAATCAGTGTTGGTAATGACAT
AAAACAATAAATTTTAAATC

Downstream 100 bases:

>100_bases
AAGTAAGTAAAATATTTATAATTGCAGTTGTTGCTTATCTTATAATTAATATAGGTATTTATGCGTATTCAGCAAATAAA
GGAACCTTAAAAGCCTTACA

Product: peptide transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MIMGSLIMQSSFLKFAVRRVINGIVTLLLLILFVFILIHAAAPNPAALARIYAGNPHAPPTEIDEIIKEYNLNAPLYVQF
VDYIKDIFTGNWGIDPIYKVQESSLLFHYLPISLQIVIPGDILAAIIGILSGAVAAANRGTLKDRSIKGVYLLTWASPPF
LVALVLQLIIAYYLGLLPPNGTVNPLLKAPPSYTPFPILNALIAGDWPYFISAVRHAVLPAISIAIITFGLFTRITRSSM
LDAMESDYTKLAFAKGLKRNYVVYRVALRNSLIPVITLIALFFGYSVAGAVIIEDIYHYLGIGYFITQAIESLDYIAVLD
FTIIIGIAVIIANFIADVLYGILDPRVKLE

Sequences:

>Translated_350_residues
MIMGSLIMQSSFLKFAVRRVINGIVTLLLLILFVFILIHAAAPNPAALARIYAGNPHAPPTEIDEIIKEYNLNAPLYVQF
VDYIKDIFTGNWGIDPIYKVQESSLLFHYLPISLQIVIPGDILAAIIGILSGAVAAANRGTLKDRSIKGVYLLTWASPPF
LVALVLQLIIAYYLGLLPPNGTVNPLLKAPPSYTPFPILNALIAGDWPYFISAVRHAVLPAISIAIITFGLFTRITRSSM
LDAMESDYTKLAFAKGLKRNYVVYRVALRNSLIPVITLIALFFGYSVAGAVIIEDIYHYLGIGYFITQAIESLDYIAVLD
FTIIIGIAVIIANFIADVLYGILDPRVKLE
>Mature_350_residues
MIMGSLIMQSSFLKFAVRRVINGIVTLLLLILFVFILIHAAAPNPAALARIYAGNPHAPPTEIDEIIKEYNLNAPLYVQF
VDYIKDIFTGNWGIDPIYKVQESSLLFHYLPISLQIVIPGDILAAIIGILSGAVAAANRGTLKDRSIKGVYLLTWASPPF
LVALVLQLIIAYYLGLLPPNGTVNPLLKAPPSYTPFPILNALIAGDWPYFISAVRHAVLPAISIAIITFGLFTRITRSSM
LDAMESDYTKLAFAKGLKRNYVVYRVALRNSLIPVITLIALFFGYSVAGAVIIEDIYHYLGIGYFITQAIESLDYIAVLD
FTIIIGIAVIIANFIADVLYGILDPRVKLE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=30.3834808259587, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1787497, Length=339, Percent_Identity=29.4985250737463, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787761, Length=339, Percent_Identity=30.9734513274336, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=25.8928571428571, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789888, Length=338, Percent_Identity=26.0355029585799, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787550, Length=295, Percent_Identity=28.8135593220339, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1788504, Length=306, Percent_Identity=24.8366013071895, Blast_Score=88, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38485; Mature: 38485

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMGSLIMQSSFLKFAVRRVINGIVTLLLLILFVFILIHAAAPNPAALARIYAGNPHAPP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCCC
TEIDEIIKEYNLNAPLYVQFVDYIKDIFTGNWGIDPIYKVQESSLLFHYLPISLQIVIPG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECEEEEEEECH
DILAAIIGILSGAVAAANRGTLKDRSIKGVYLLTWASPPFLVALVLQLIIAYYLGLLPPN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
GTVNPLLKAPPSYTPFPILNALIAGDWPYFISAVRHAVLPAISIAIITFGLFTRITRSSM
CCCCCHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDAMESDYTKLAFAKGLKRNYVVYRVALRNSLIPVITLIALFFGYSVAGAVIIEDIYHYL
HHHHHHHHHHHHHHHCCCCCHHEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIGYFITQAIESLDYIAVLDFTIIIGIAVIIANFIADVLYGILDPRVKLE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIMGSLIMQSSFLKFAVRRVINGIVTLLLLILFVFILIHAAAPNPAALARIYAGNPHAPP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCCC
TEIDEIIKEYNLNAPLYVQFVDYIKDIFTGNWGIDPIYKVQESSLLFHYLPISLQIVIPG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECEEEEEEECH
DILAAIIGILSGAVAAANRGTLKDRSIKGVYLLTWASPPFLVALVLQLIIAYYLGLLPPN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
GTVNPLLKAPPSYTPFPILNALIAGDWPYFISAVRHAVLPAISIAIITFGLFTRITRSSM
CCCCCHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDAMESDYTKLAFAKGLKRNYVVYRVALRNSLIPVITLIALFFGYSVAGAVIIEDIYHYL
HHHHHHHHHHHHHHHCCCCCHHEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIGYFITQAIESLDYIAVLDFTIIIGIAVIIANFIADVLYGILDPRVKLE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]