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The map label for this gene is ddpC [H]

Identifier: 15922875

GI number: 15922875

Start: 2550493

End: 2551569

Strand: Direct

Name: ddpC [H]

Synonym: ST2541

Alternate gene names: 15922875

Gene position: 2550493-2551569 (Clockwise)

Preceding gene: 15922874

Following gene: 15922876

Centisome position: 94.65

GC content: 33.89

Gene sequence:

>1077_bases
ATGAAAGTAAGTAAAATATTTATAATTGCAGTTGTTGCTTATCTTATAATTAATATAGGTATTTATGCGTATTCAGCAAA
TAAAGGAACCTTAAAAGCCTTACATTATCATAACACTGTGTTAGTGCCTTATGTACTATTTTCTACATTCAGCATAACCG
CCTCTTTTGTAGCTTTAGGAATTTATTTTATATATAAGAATAGCTTAATGAGAAACGCGCTAAAAAGTAAAGTAGCATTT
GGTGCGTTAATAATAATCTTCGCTTACTATACATGGTCTATATTTGAGGGGCTTTTGCAATATGCTTCTCATCAAATTCT
ATATTTTCCGTTAGCATACAAGTTCCTACCATATAATCCATTCCAATTTAATTTCACAGCATCATTATTACCGCCATCAA
TTCATCATCCTTTCGGAACGAATTATAATGGTGAAGACATTCTGAGTAGAATCTTATACGCTGCCCCCTCAGATGCAGAA
ATATCAACTGTAGTTGTAATTTCAGCAATTATAATTGGAGGTTTAATAGGAATGTTTGCTGGGTATTTTGGAGGATGGGT
TGATGAAGTGTTGATGAGAATTACAGATGTATTCTTAGCAATACCCGGTCTAATACTGGTTATTGCTGTTGCAGTTCTTT
TGGGATCTAGTTTTACTAGTGCAATGATTGGATTAATGATACCTTGGTGGGCAACATATGCAAGATTATTTAGAAGTCAA
ACTTTAGTAGTTAAGAACATGGGTTATGTTGATATGGCAAAATTAATGGGGTTTAGAAGTTTTAGAATAATTTTCAAACA
TGTGTTCCATAACGTTATAGATCCTATCCTATCTTATGCTGCGTTAGACTTTGGCAACGTAATTTTAACTTATGCAAGCT
TAACCTTTTTAGGAATAGGACTACAAGGTATTAATCAGCCAGAGTGGGGTGCAATGGTATCTGATGGTTTACAGTACTTA
CCGCATGTATGGTGGTGGTCTTTATTTCCCTCCATTATCATTTTAGTTTTGGTAGCGTCATTCGTAATTTTGGGTGATAG
ATTACAAGATGTAATTGCAGGGAGGGTTACATATTGA

Upstream 100 bases:

>100_bases
CCGTTTTAGATTTTACGATAATTATTGGTATTGCTGTAATAATAGCCAACTTTATAGCTGATGTACTTTACGGTATTTTA
GACCCAAGGGTGAAATTAGA

Downstream 100 bases:

>100_bases
AAGTCCTTGAAGTCAAAAATCTTTCAGTAGGGTATAAATCACTAGTTGGGAAATTTAGAGTCCTACATAATGTAACCTTT
AATGTGGAGAGCGGAGAAAT

Product: peptide transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKVSKIFIIAVVAYLIINIGIYAYSANKGTLKALHYHNTVLVPYVLFSTFSITASFVALGIYFIYKNSLMRNALKSKVAF
GALIIIFAYYTWSIFEGLLQYASHQILYFPLAYKFLPYNPFQFNFTASLLPPSIHHPFGTNYNGEDILSRILYAAPSDAE
ISTVVVISAIIIGGLIGMFAGYFGGWVDEVLMRITDVFLAIPGLILVIAVAVLLGSSFTSAMIGLMIPWWATYARLFRSQ
TLVVKNMGYVDMAKLMGFRSFRIIFKHVFHNVIDPILSYAALDFGNVILTYASLTFLGIGLQGINQPEWGAMVSDGLQYL
PHVWWWSLFPSIIILVLVASFVILGDRLQDVIAGRVTY

Sequences:

>Translated_358_residues
MKVSKIFIIAVVAYLIINIGIYAYSANKGTLKALHYHNTVLVPYVLFSTFSITASFVALGIYFIYKNSLMRNALKSKVAF
GALIIIFAYYTWSIFEGLLQYASHQILYFPLAYKFLPYNPFQFNFTASLLPPSIHHPFGTNYNGEDILSRILYAAPSDAE
ISTVVVISAIIIGGLIGMFAGYFGGWVDEVLMRITDVFLAIPGLILVIAVAVLLGSSFTSAMIGLMIPWWATYARLFRSQ
TLVVKNMGYVDMAKLMGFRSFRIIFKHVFHNVIDPILSYAALDFGNVILTYASLTFLGIGLQGINQPEWGAMVSDGLQYL
PHVWWWSLFPSIIILVLVASFVILGDRLQDVIAGRVTY
>Mature_358_residues
MKVSKIFIIAVVAYLIINIGIYAYSANKGTLKALHYHNTVLVPYVLFSTFSITASFVALGIYFIYKNSLMRNALKSKVAF
GALIIIFAYYTWSIFEGLLQYASHQILYFPLAYKFLPYNPFQFNFTASLLPPSIHHPFGTNYNGEDILSRILYAAPSDAE
ISTVVVISAIIIGGLIGMFAGYFGGWVDEVLMRITDVFLAIPGLILVIAVAVLLGSSFTSAMIGLMIPWWATYARLFRSQ
TLVVKNMGYVDMAKLMGFRSFRIIFKHVFHNVIDPILSYAALDFGNVILTYASLTFLGIGLQGINQPEWGAMVSDGLQYL
PHVWWWSLFPSIIILVLVASFVILGDRLQDVIAGRVTY

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=237, Percent_Identity=40.084388185654, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1789964, Length=242, Percent_Identity=38.4297520661157, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1787054, Length=229, Percent_Identity=35.3711790393013, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=32.2175732217573, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1787549, Length=247, Percent_Identity=33.1983805668016, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787498, Length=245, Percent_Identity=28.9795918367347, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=26.3636363636364, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 39979; Mature: 39979

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSKIFIIAVVAYLIINIGIYAYSANKGTLKALHYHNTVLVPYVLFSTFSITASFVALG
CCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
IYFIYKNSLMRNALKSKVAFGALIIIFAYYTWSIFEGLLQYASHQILYFPLAYKFLPYNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCC
FQFNFTASLLPPSIHHPFGTNYNGEDILSRILYAAPSDAEISTVVVISAIIIGGLIGMFA
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
GYFGGWVDEVLMRITDVFLAIPGLILVIAVAVLLGSSFTSAMIGLMIPWWATYARLFRSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
TLVVKNMGYVDMAKLMGFRSFRIIFKHVFHNVIDPILSYAALDFGNVILTYASLTFLGIG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LQGINQPEWGAMVSDGLQYLPHVWWWSLFPSIIILVLVASFVILGDRLQDVIAGRVTY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKVSKIFIIAVVAYLIINIGIYAYSANKGTLKALHYHNTVLVPYVLFSTFSITASFVALG
CCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
IYFIYKNSLMRNALKSKVAFGALIIIFAYYTWSIFEGLLQYASHQILYFPLAYKFLPYNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCC
FQFNFTASLLPPSIHHPFGTNYNGEDILSRILYAAPSDAEISTVVVISAIIIGGLIGMFA
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
GYFGGWVDEVLMRITDVFLAIPGLILVIAVAVLLGSSFTSAMIGLMIPWWATYARLFRSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
TLVVKNMGYVDMAKLMGFRSFRIIFKHVFHNVIDPILSYAALDFGNVILTYASLTFLGIG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LQGINQPEWGAMVSDGLQYLPHVWWWSLFPSIIILVLVASFVILGDRLQDVIAGRVTY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]