Click here to switch to the map view.

The map label for this gene is 15922295

Identifier: 15922295

GI number: 15922295

Start: 1988479

End: 1989369

Strand: Direct

Name: 15922295

Synonym: ST1978

Alternate gene names: NA

Gene position: 1988479-1989369 (Clockwise)

Preceding gene: 15922294

Following gene: 15922296

Centisome position: 73.79

GC content: 31.43

Gene sequence:

>891_bases
ATGGATTTGTATAAAATTCTTAATATGATTGATAAAAATTATTTTTCACCAAATAATAAAAATCGACTCGGAAAGACAAA
TCTTTATTCATTACTACAACTTGAGGGCATACTAGTTAGCATGCTGAGAATGTACAGTGAACATAAAATAGACCAACTAC
GAGACTTGCCTATTTCTGAGATTTATAAAAGCTATATAAAGTTTAAGGATAATAATCAGAATAATTACGAGACCTATAAG
ATAGAAGAAATATATGATACCAAGAAGAGACATATAGCTGAATTACTTTCGATTATGTATAATCCAGGTTTTGAAATTGT
AAATAAGATGATGGAAGAGATTAAATCGGCATTGCGTGAAATGAACTATAAGTTTATTGAAGTTAGAATAAAGACCTCAT
CAAAGACACTTGTTGGTGTCTCAACTAATTTCGGATATACGATCTTTGAGAACGGTATCTCATTTGATCCTTATTTAAAT
GTACCTTATATCCCAGCATCAGAAATTAAAGGGTTGTTAAGAAGTATGACAGATGATGAGAAATTAGCGGATAAATTATT
CGGTAGTGAAGAATCTGAAGGGATTTTGATGATAACTGATTCATATCCCATACAAGCAGAGGGGAGTATTTTCTTACCCG
ATATAATAACGCCCCACTACGTTAATGCTGAAGATGAGTCAAGAGTACAGCCTAAACCCTCCATTAGGTTTGTAATAGCA
CCTAAAGTAACTTTTGATTTTTTCATTTACTATAAAAATCTGGATACATATTTAAGGAAAGTTTTAGAGCAATTAATTAT
TAAAATGATAAAAGAGGGTATAGGTAGTAAGACGTCTCTAGGTTATTCCTTGTTTACAGTAGTTTACATAGACTGGACTT
ACGGTGAGTAA

Upstream 100 bases:

>100_bases
GGATAAATATGATAAAAATAAAAAACGACTGATTGATAAATATAAAAATAAAATAAATGAATTTATTAATAAAATTAAAA
TTTCGGAGGATGTGACATAA

Downstream 100 bases:

>100_bases
AATGAGTCTCAAACCCATGAGTGAAATAATTAAAGAGAAATTTGCAGCATTATTACATGATCCTCCTAATAAACCGTTTA
TATTTAGCCTTAATGCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated RAMP Protein Cmr6 Family; Cmr6 Family CRISPR-Associated RAMP Protein

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDLYKILNMIDKNYFSPNNKNRLGKTNLYSLLQLEGILVSMLRMYSEHKIDQLRDLPISEIYKSYIKFKDNNQNNYETYK
IEEIYDTKKRHIAELLSIMYNPGFEIVNKMMEEIKSALREMNYKFIEVRIKTSSKTLVGVSTNFGYTIFENGISFDPYLN
VPYIPASEIKGLLRSMTDDEKLADKLFGSEESEGILMITDSYPIQAEGSIFLPDIITPHYVNAEDESRVQPKPSIRFVIA
PKVTFDFFIYYKNLDTYLRKVLEQLIIKMIKEGIGSKTSLGYSLFTVVYIDWTYGE

Sequences:

>Translated_296_residues
MDLYKILNMIDKNYFSPNNKNRLGKTNLYSLLQLEGILVSMLRMYSEHKIDQLRDLPISEIYKSYIKFKDNNQNNYETYK
IEEIYDTKKRHIAELLSIMYNPGFEIVNKMMEEIKSALREMNYKFIEVRIKTSSKTLVGVSTNFGYTIFENGISFDPYLN
VPYIPASEIKGLLRSMTDDEKLADKLFGSEESEGILMITDSYPIQAEGSIFLPDIITPHYVNAEDESRVQPKPSIRFVIA
PKVTFDFFIYYKNLDTYLRKVLEQLIIKMIKEGIGSKTSLGYSLFTVVYIDWTYGE
>Mature_296_residues
MDLYKILNMIDKNYFSPNNKNRLGKTNLYSLLQLEGILVSMLRMYSEHKIDQLRDLPISEIYKSYIKFKDNNQNNYETYK
IEEIYDTKKRHIAELLSIMYNPGFEIVNKMMEEIKSALREMNYKFIEVRIKTSSKTLVGVSTNFGYTIFENGISFDPYLN
VPYIPASEIKGLLRSMTDDEKLADKLFGSEESEGILMITDSYPIQAEGSIFLPDIITPHYVNAEDESRVQPKPSIRFVIA
PKVTFDFFIYYKNLDTYLRKVLEQLIIKMIKEGIGSKTSLGYSLFTVVYIDWTYGE

Specific function: Unknown

COG id: COG1604

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34539; Mature: 34539

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLYKILNMIDKNYFSPNNKNRLGKTNLYSLLQLEGILVSMLRMYSEHKIDQLRDLPISE
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IYKSYIKFKDNNQNNYETYKIEEIYDTKKRHIAELLSIMYNPGFEIVNKMMEEIKSALRE
HHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
MNYKFIEVRIKTSSKTLVGVSTNFGYTIFENGISFDPYLNVPYIPASEIKGLLRSMTDDE
CCCEEEEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH
KLADKLFGSEESEGILMITDSYPIQAEGSIFLPDIITPHYVNAEDESRVQPKPSIRFVIA
HHHHHHCCCCCCCCEEEEECCCCCCCCCCEECCCCCCCCEECCCCCCCCCCCCCEEEEEE
PKVTFDFFIYYKNLDTYLRKVLEQLIIKMIKEGIGSKTSLGYSLFTVVYIDWTYGE
CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCC
>Mature Secondary Structure
MDLYKILNMIDKNYFSPNNKNRLGKTNLYSLLQLEGILVSMLRMYSEHKIDQLRDLPISE
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IYKSYIKFKDNNQNNYETYKIEEIYDTKKRHIAELLSIMYNPGFEIVNKMMEEIKSALRE
HHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
MNYKFIEVRIKTSSKTLVGVSTNFGYTIFENGISFDPYLNVPYIPASEIKGLLRSMTDDE
CCCEEEEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH
KLADKLFGSEESEGILMITDSYPIQAEGSIFLPDIITPHYVNAEDESRVQPKPSIRFVIA
HHHHHHCCCCCCCCEEEEECCCCCCCCCCEECCCCCCCCEECCCCCCCCCCCCCEEEEEE
PKVTFDFFIYYKNLDTYLRKVLEQLIIKMIKEGIGSKTSLGYSLFTVVYIDWTYGE
CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA