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The map label for this gene is cbiD

Identifier: 15922134

GI number: 15922134

Start: 1834447

End: 1835511

Strand: Reverse

Name: cbiD

Synonym: ST1821

Alternate gene names: 15922134

Gene position: 1835511-1834447 (Counterclockwise)

Preceding gene: 15922135

Following gene: 15922132

Centisome position: 68.11

GC content: 35.96

Gene sequence:

>1065_bases
ATGATTATGTCAATGCTTTCAACTCTTAAAAGATTTGGAATAACAACCGGGGCTACTGCAGCGGCATCAGCAAAGGCCTC
TGTTATCTATTTATTTCGTAATGAAACTCCTAAAAGTGTTACAATTCCAACTCCAATTGGTTTAAGACTAGAAATTCCGG
TAGATGACTATGAAAGAAGAGGAGAAGAATACTGTGCTACAGTTACAAAATTTTCTGGGGACAACCCAGATGTATTAAAT
GGATTAAAGATTGTTAGCTGTAGTACAAAGTGTGATTCCGGAATTTTCATAGAAGGAGGAAATGGGATAGGTGTAGTTAC
TAAACCAGGACTTAAAGTAGAAGTGGGTGAAAAAGCGATAAATCCAATAGCAAGACAAATGATAATAGATGCTATAAATG
AAGTAACCACTGATGGTGTAAAGGTTAGGATCGAAGTTCCAGATGGTGAAAAAATAGCCGAACTTACAATGAATAAGGAC
GTTGGAGTTATTAACGGTATTTCAATTTTAGGAACTACTGGTATTGAGTATCCTATCAGTGATGATGAATATCTTGAGCA
CATAAAAAGTGAGATATGCGTTGTTAAGGCTTTAGGGAAGAAGAAGTTAATCTTAGCACCAGGTAATACTAGCTTTGAGT
TTGCCAGGAAACGTTATGGCGATAATGTAGTAAAGATAGGAGATAGAGTAGGTGATTCAATAAGGTTAGCAATTGAGCAA
GGTTTTACTCATATAGTTTTAGTCAGCTTACCTGGGAAAATAACTAAAGTTGCATCTGGTTTAATGAACACCCATAGTAA
ATATGGTGATGCAAGAATAGAAACCTTAACTCACGCAGCAGTTCTAGCGAAATTAGACATTGAAAAGATAAATAAGATAG
CTAACTCTGCTACTGTGACAGAAGCAATTACATACCTTTTACCAGAGGAAAGAAAGACACTCTTCAGCATAGTAGCTAAA
AGAGTTCTTCAGAGGTTAAGGAAGATTGTGAAAAATGATGTGAAATTAGGTGTAGTTATTATTTCTGAAGAAGGAGAAGT
TTTAGCTGAGGAGGGTGAGTTATGA

Upstream 100 bases:

>100_bases
CTTGATAAAATAAATATGGTTACTATGATGATTATTGGTAATTCTCGTTCATATATATGTAATGGTAAAATAATAACTCC
AAGAGGTTATACGTCGAGGT

Downstream 100 bases:

>100_bases
GACTACCCGGAATACCGGATGAGGAATTTATAAGGGTTGAAAAGATACCGATGACAAAGGAGGAAATAAGAGTTTTAGCT
CTTTCAAAGGCAAGGCTATT

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MIMSMLSTLKRFGITTGATAAASAKASVIYLFRNETPKSVTIPTPIGLRLEIPVDDYERRGEEYCATVTKFSGDNPDVLN
GLKIVSCSTKCDSGIFIEGGNGIGVVTKPGLKVEVGEKAINPIARQMIIDAINEVTTDGVKVRIEVPDGEKIAELTMNKD
VGVINGISILGTTGIEYPISDDEYLEHIKSEICVVKALGKKKLILAPGNTSFEFARKRYGDNVVKIGDRVGDSIRLAIEQ
GFTHIVLVSLPGKITKVASGLMNTHSKYGDARIETLTHAAVLAKLDIEKINKIANSATVTEAITYLLPEERKTLFSIVAK
RVLQRLRKIVKNDVKLGVVIISEEGEVLAEEGEL

Sequences:

>Translated_354_residues
MIMSMLSTLKRFGITTGATAAASAKASVIYLFRNETPKSVTIPTPIGLRLEIPVDDYERRGEEYCATVTKFSGDNPDVLN
GLKIVSCSTKCDSGIFIEGGNGIGVVTKPGLKVEVGEKAINPIARQMIIDAINEVTTDGVKVRIEVPDGEKIAELTMNKD
VGVINGISILGTTGIEYPISDDEYLEHIKSEICVVKALGKKKLILAPGNTSFEFARKRYGDNVVKIGDRVGDSIRLAIEQ
GFTHIVLVSLPGKITKVASGLMNTHSKYGDARIETLTHAAVLAKLDIEKINKIANSATVTEAITYLLPEERKTLFSIVAK
RVLQRLRKIVKNDVKLGVVIISEEGEVLAEEGEL
>Mature_354_residues
MIMSMLSTLKRFGITTGATAAASAKASVIYLFRNETPKSVTIPTPIGLRLEIPVDDYERRGEEYCATVTKFSGDNPDVLN
GLKIVSCSTKCDSGIFIEGGNGIGVVTKPGLKVEVGEKAINPIARQMIIDAINEVTTDGVKVRIEVPDGEKIAELTMNKD
VGVINGISILGTTGIEYPISDDEYLEHIKSEICVVKALGKKKLILAPGNTSFEFARKRYGDNVVKIGDRVGDSIRLAIEQ
GFTHIVLVSLPGKITKVASGLMNTHSKYGDARIETLTHAAVLAKLDIEKINKIANSATVTEAITYLLPEERKTLFSIVAK
RVLQRLRKIVKNDVKLGVVIISEEGEVLAEEGEL

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_SULTO (Q96ZL3)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_377803.1
- ProteinModelPortal:   Q96ZL3
- GeneID:   1459877
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST1821
- NMPDR:   fig|273063.1.peg.1971
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   STOK273063:ST1821-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 38324; Mature: 38324

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMSMLSTLKRFGITTGATAAASAKASVIYLFRNETPKSVTIPTPIGLRLEIPVDDYERR
CHHHHHHHHHHHCCCCCCCHHCCCCEEEEEEEECCCCCEEECCCCCCEEEEECCCHHHHC
GEEYCATVTKFSGDNPDVLNGLKIVSCSTKCDSGIFIEGGNGIGVVTKPGLKVEVGEKAI
CHHHHHHHHCCCCCCCHHHCCEEEEEECCCCCCCEEEECCCEEEEEECCCCEEEECHHHH
NPIARQMIIDAINEVTTDGVKVRIEVPDGEKIAELTMNKDVGVINGISILGTTGIEYPIS
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHEEECCCCCEEECEEEEECCCCCCCCC
DDEYLEHIKSEICVVKALGKKKLILAPGNTSFEFARKRYGDNVVKIGDRVGDSIRLAIEQ
CHHHHHHHHHHHEEEEECCCCEEEECCCCCCHHHHHHHHCCCEEEEHHHCCCCEEEEEEC
GFTHIVLVSLPGKITKVASGLMNTHSKYGDARIETLTHAAVLAKLDIEKINKIANSATVT
CCEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHH
EAITYLLPEERKTLFSIVAKRVLQRLRKIVKNDVKLGVVIISEEGEVLAEEGEL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCCC
>Mature Secondary Structure
MIMSMLSTLKRFGITTGATAAASAKASVIYLFRNETPKSVTIPTPIGLRLEIPVDDYERR
CHHHHHHHHHHHCCCCCCCHHCCCCEEEEEEEECCCCCEEECCCCCCEEEEECCCHHHHC
GEEYCATVTKFSGDNPDVLNGLKIVSCSTKCDSGIFIEGGNGIGVVTKPGLKVEVGEKAI
CHHHHHHHHCCCCCCCHHHCCEEEEEECCCCCCCEEEECCCEEEEEECCCCEEEECHHHH
NPIARQMIIDAINEVTTDGVKVRIEVPDGEKIAELTMNKDVGVINGISILGTTGIEYPIS
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHEEECCCCCEEECEEEEECCCCCCCCC
DDEYLEHIKSEICVVKALGKKKLILAPGNTSFEFARKRYGDNVVKIGDRVGDSIRLAIEQ
CHHHHHHHHHHHEEEEECCCCEEEECCCCCCHHHHHHHHCCCEEEEHHHCCCCEEEEEEC
GFTHIVLVSLPGKITKVASGLMNTHSKYGDARIETLTHAAVLAKLDIEKINKIANSATVT
CCEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHH
EAITYLLPEERKTLFSIVAKRVLQRLRKIVKNDVKLGVVIISEEGEVLAEEGEL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479