Click here to switch to the map view.

The map label for this gene is rpoK

Identifier: 15921480

GI number: 15921480

Start: 1219238

End: 1219498

Strand: Reverse

Name: rpoK

Synonym: STS136

Alternate gene names: 15921480

Gene position: 1219498-1219238 (Counterclockwise)

Preceding gene: 15921481

Following gene: 15921479

Centisome position: 45.25

GC content: 34.1

Gene sequence:

>261_bases
GTGAGTATAAATAAAATTTTTGAGGAGAGCTGGAAAAACAGATTAACGAAATACGAGATAGCTAGAATTATAAGTGCCAG
AGCATTACAATTAGCTATGGGAGCTTCTCCTCTTATAGACACTAATAATTTACCTTTTAATGATGTAATTAGTATAGCAG
AAGAAGAGCTTAAGCGTGGGGTCTTACCTATTACAGTAAGGCGTGTATATCCTAATGGGAAGATAGAGTTGGTTTCAGTT
AAAAAGGTAGAGTTTAAATAG

Upstream 100 bases:

>100_bases
TATGACTATTTACCTCCAAGAGAATGTAAGCTTCCAGAATTACTAGAAAAAGAAGTTGAATGGAGTTAATCTTATTTAAA
TCTTTAGGGAGTGTTTAAGT

Downstream 100 bases:

>100_bases
TATGAATTGTTATCCTAAAAATTATATCTTAGTTATTGCAGAAAAAAGTAAAGCTGCAAAGAAAATAGCTGAGGCTTTAT
CAGATAAACCAACTACATGT

Product: DNA-directed RNA polymerase subunit K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSINKIFEESWKNRLTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGKIELVSV
KKVEFK

Sequences:

>Translated_86_residues
MSINKIFEESWKNRLTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGKIELVSV
KKVEFK
>Mature_85_residues
SINKIFEESWKNRLTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGKIELVSVK
KVEFK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOK_SULTO (Q972B1)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_377149.1
- ProteinModelPortal:   Q972B1
- SMR:   Q972B1
- GeneID:   1459215
- GenomeReviews:   BA000023_GR
- KEGG:   sto:STS136
- NMPDR:   fig|273063.1.peg.1317
- HOGENOM:   HBG646526
- OMA:   RRINNGR
- ProtClustDB:   PRK01099
- BioCyc:   STOK273063:STS136-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00192
- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- PANTHER:   PTHR10773

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9816; Mature: 9684

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINKIFEESWKNRLTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCC
VLPITVRRVYPNGKIELVSVKKVEFK
CCEEEEEEECCCCCEEEEEEEEECCC
>Mature Secondary Structure 
SINKIFEESWKNRLTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCC
VLPITVRRVYPNGKIELVSVKKVEFK
CCEEEEEEECCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479