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The map label for this gene is 15921174

Identifier: 15921174

GI number: 15921174

Start: 916594

End: 916764

Strand: Reverse

Name: 15921174

Synonym: STS104

Alternate gene names: NA

Gene position: 916764-916594 (Counterclockwise)

Preceding gene: 15921175

Following gene: 15921167

Centisome position: 34.02

GC content: 28.65

Gene sequence:

>171_bases
ATGAAATGGAAAATAAAAAAATGCCCTAAGGATTGCACATACACTTTAAAAGATATATGCCCTATTTGTGGTACTCCTAC
AATTATTCCCCATCCAGCTAGATTTTCTCCGGTAGACAAATATGTAAAATATAGAATAGAAATAAAAAAAGGGATAAAAT
TAAATTGTTAA

Upstream 100 bases:

>100_bases
GCACAGATCCGAAGCTTCTCTCTAAAGTAATGACCGAAATATTAGATAATATAAGAGAAATAAGTAAAGAGGAAAAAGTA
GAATTTAATGTGGTAAGAAA

Downstream 100 bases:

>100_bases
GTATTTATTGTAGTCCCATTTTCTTGAATTATTAAGGGTAGAATAACATTTGGTTCTACAAACTGATAAACTACAACAAT
AATATATACTATTGCTTCCC

Product: H/ACA RNA-protein complex component Nop10p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 56

Protein sequence:

>56_residues
MKWKIKKCPKDCTYTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKKGIKLNC

Sequences:

>Translated_56_residues
MKWKIKKCPKDCTYTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKKGIKLNC
>Mature_56_residues
MKWKIKKCPKDCTYTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKKGIKLNC

Specific function: Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA

COG id: COG2260

COG function: function code J; Predicted Zn-ribbon RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NOP10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOP10_SULTO (Q973G1)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376843.1
- ProteinModelPortal:   Q973G1
- SMR:   Q973G1
- GeneID:   1458903
- GenomeReviews:   BA000023_GR
- KEGG:   sto:STS104
- NMPDR:   fig|273063.1.peg.1011
- HOGENOM:   HBG498094
- OMA:   PHPPRFS
- ProtClustDB:   PRK13130
- BioCyc:   STOK273063:STS104-MONOMER
- HAMAP:   MF_00803
- InterPro:   IPR007264
- PANTHER:   PTHR13305

Pfam domain/function: PF04135 Nop10p

EC number: NA

Molecular weight: Translated: 6525; Mature: 6525

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
8.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
10.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWKIKKCPKDCTYTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKKGIKLNC
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHEEHEEECCCEEECC
>Mature Secondary Structure
MKWKIKKCPKDCTYTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKKGIKLNC
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHEEHEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479