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The map label for this gene is ygiD [H]

Identifier: 15921005

GI number: 15921005

Start: 751263

End: 752045

Strand: Reverse

Name: ygiD [H]

Synonym: ST0771

Alternate gene names: 15921005

Gene position: 752045-751263 (Counterclockwise)

Preceding gene: 15921007

Following gene: 15921003

Centisome position: 27.91

GC content: 35.25

Gene sequence:

>783_bases
ATGGAAGAAAATGTAGAATATAACCTAATGAAAGGAATATTTGTATCTCACGGCTCTCCAATGATCCTGGTAGAGAACGA
CCCTTGGAAAGACTTACTTAGAGAGTGGGGGAAGAGACTTGGAAAATTCGATAGTGTAATAATAATTAGCCCACACTTCT
TCAGCTGGTCCGGAACTTTCCTAGTAGAGACTCAGCCAAAACTTGAGTGTATTCAAGATTATTATGGTTTTCCAGATGAG
TTATATAAATTCTGTTATTCAGCTGATAATGATGTCGATTTAGCAAATAAAATTGTAGAGGAGGGACAAAAAGAAGGATT
ACCAATAAAGCAAGATAATAAATGGGGATTAGATCATGGAGCATGGATTCCGTTAATGTATATGTATCCAGAAGGTGTAA
AAGCCGTTACAATTTCAATAACTGACTTATCAGCAGAAATTCACTATAAACTTGGAGAAGTCATCGGGAGAGTTGTAGGA
GACAGAAATGTATTAATTATAGGTACTGGGTCTCCCACTCATAGGCTTGAATTAATGTATTTAAATGCAAAACCTAGACA
GACTAAATTTGATCAAATATTAATTCAGAAATTAAAAGATGGTGATTTCACTTCACTCTTTAAATTAGAAGGAACAAAAG
AATGGGAAATAGCTTCACCAGAGGGAATGCTTAGACCTCTATTTGTAGTATTAGGGGCAGTTAAACCAAAAAAAGCTGAA
ATTATAGGTTACGAAGTGCCTTATGGTGGTGTAAGTATGTTAGCTGTTGAGTTCTACAGTTAA

Upstream 100 bases:

>100_bases
ATAAATAAAAAAATTAATTTTTTTATTTTTTTGTAAAGATTGACTTGAAATAGAAGCTGAAATCTTATGGTAAATTTCCT
ACCGGAAACTTAATTTATAA

Downstream 100 bases:

>100_bases
TAATGAGTACATTAAATCCCTCTCAGTTACAATACCAACTAATTTAGAATTATCAACAACGGGTAAAGTACCTATCTTTT
TCTCTTTCATAATTTTAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEENVEYNLMKGIFVSHGSPMILVENDPWKDLLREWGKRLGKFDSVIIISPHFFSWSGTFLVETQPKLECIQDYYGFPDE
LYKFCYSADNDVDLANKIVEEGQKEGLPIKQDNKWGLDHGAWIPLMYMYPEGVKAVTISITDLSAEIHYKLGEVIGRVVG
DRNVLIIGTGSPTHRLELMYLNAKPRQTKFDQILIQKLKDGDFTSLFKLEGTKEWEIASPEGMLRPLFVVLGAVKPKKAE
IIGYEVPYGGVSMLAVEFYS

Sequences:

>Translated_260_residues
MEENVEYNLMKGIFVSHGSPMILVENDPWKDLLREWGKRLGKFDSVIIISPHFFSWSGTFLVETQPKLECIQDYYGFPDE
LYKFCYSADNDVDLANKIVEEGQKEGLPIKQDNKWGLDHGAWIPLMYMYPEGVKAVTISITDLSAEIHYKLGEVIGRVVG
DRNVLIIGTGSPTHRLELMYLNAKPRQTKFDQILIQKLKDGDFTSLFKLEGTKEWEIASPEGMLRPLFVVLGAVKPKKAE
IIGYEVPYGGVSMLAVEFYS
>Mature_260_residues
MEENVEYNLMKGIFVSHGSPMILVENDPWKDLLREWGKRLGKFDSVIIISPHFFSWSGTFLVETQPKLECIQDYYGFPDE
LYKFCYSADNDVDLANKIVEEGQKEGLPIKQDNKWGLDHGAWIPLMYMYPEGVKAVTISITDLSAEIHYKLGEVIGRVVG
DRNVLIIGTGSPTHRLELMYLNAKPRQTKFDQILIQKLKDGDFTSLFKLEGTKEWEIASPEGMLRPLFVVLGAVKPKKAE
IIGYEVPYGGVSMLAVEFYS

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=264, Percent_Identity=28.030303030303, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29563; Mature: 29563

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEENVEYNLMKGIFVSHGSPMILVENDPWKDLLREWGKRLGKFDSVIIISPHFFSWSGTF
CCCCCCEEEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCEE
LVETQPKLECIQDYYGFPDELYKFCYSADNDVDLANKIVEEGQKEGLPIKQDNKWGLDHG
EEECCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
AWIPLMYMYPEGVKAVTISITDLSAEIHYKLGEVIGRVVGDRNVLIIGTGSPTHRLELMY
CCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEE
LNAKPRQTKFDQILIQKLKDGDFTSLFKLEGTKEWEIASPEGMLRPLFVVLGAVKPKKAE
ECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHCCCCCCCEE
IIGYEVPYGGVSMLAVEFYS
EEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MEENVEYNLMKGIFVSHGSPMILVENDPWKDLLREWGKRLGKFDSVIIISPHFFSWSGTF
CCCCCCEEEEEEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCEE
LVETQPKLECIQDYYGFPDELYKFCYSADNDVDLANKIVEEGQKEGLPIKQDNKWGLDHG
EEECCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
AWIPLMYMYPEGVKAVTISITDLSAEIHYKLGEVIGRVVGDRNVLIIGTGSPTHRLELMY
CCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEE
LNAKPRQTKFDQILIQKLKDGDFTSLFKLEGTKEWEIASPEGMLRPLFVVLGAVKPKKAE
ECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHCCCCCCCEE
IIGYEVPYGGVSMLAVEFYS
EEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]