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The map label for this gene is 15920650

Identifier: 15920650

GI number: 15920650

Start: 447215

End: 447913

Strand: Reverse

Name: 15920650

Synonym: ST0439

Alternate gene names: NA

Gene position: 447913-447215 (Counterclockwise)

Preceding gene: 15920651

Following gene: 15920648

Centisome position: 16.62

GC content: 30.9

Gene sequence:

>699_bases
ATGCTTAGAATTTATGCTGATTATCGTGAAAAGAACAGCGGAGTCCCAGATATTATTAAAGAATTAGGTGCTATTGTAAT
TTTTGATAATTTGAGTGTAGGAGATTATGTTATATCTGATGAAATAGCAATAGAAAGAAAAAGCGTAGAGGACTTGGTTA
ACTCTGTATTTGATAAAAGATTCTTTGATCAATTAAGTAGATTAAGTGAAGCTTACGCTAAACCTTTCATACTAATTGAA
GGTGATATGGAAAAAGTTAGAAAAATTACCTCTAGATGGAAGGCTATAAATTCTGCCTTAACAAGTGCTATTTTAGAGTT
TGATCTACGAGTAGTGTACTCCAATGATAGGAAAGAATCTGCTGAAATCATTTACAAAATAGCTGAGAAAAGTTCTACCT
CTCAGAATAAAAAAATATTAAACCTTCATGAAAAACCAAAATTTGAGAGTTTAAGGGATATGCAGCTATATGTAGTTGAA
GCTTTTCCTCAAATTGGGAGTAAATTAGCAGAGAGATTATTAGAAAAATTTGGAAGCATAGAAAGAATTTGTAATGCAAG
TGTATCCGAGCTAGAAAAAGTTCTGGAGAGTAGAAAGAAAGCTGAGGAAATATATAAAGTTATACATACAACATATACGA
ATAAAAAGGAGGAAAGAAATAATAAAACTTCTTTGCTTGACTTCTTAGAGCCTAAATGA

Upstream 100 bases:

>100_bases
GAACTACTTGCAAAGTATTATCCCCAAAGTGGGGGAGCTATAAAGGCATAATTTTTTGAACCAAGTATTTTATATTATAT
TAACTTCAATTTATTACTTG

Downstream 100 bases:

>100_bases
AACTACAGCTTTCTGTTTTTCTGCTTTCCAATCAACATTTACTGGAGGTAAGCCAGACTTGCTCCTTAAATAGTTGTACG
CAGAAAGTGCAGCTTTCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLRIYADYREKNSGVPDIIKELGAIVIFDNLSVGDYVISDEIAIERKSVEDLVNSVFDKRFFDQLSRLSEAYAKPFILIE
GDMEKVRKITSRWKAINSALTSAILEFDLRVVYSNDRKESAEIIYKIAEKSSTSQNKKILNLHEKPKFESLRDMQLYVVE
AFPQIGSKLAERLLEKFGSIERICNASVSELEKVLESRKKAEEIYKVIHTTYTNKKEERNNKTSLLDFLEPK

Sequences:

>Translated_232_residues
MLRIYADYREKNSGVPDIIKELGAIVIFDNLSVGDYVISDEIAIERKSVEDLVNSVFDKRFFDQLSRLSEAYAKPFILIE
GDMEKVRKITSRWKAINSALTSAILEFDLRVVYSNDRKESAEIIYKIAEKSSTSQNKKILNLHEKPKFESLRDMQLYVVE
AFPQIGSKLAERLLEKFGSIERICNASVSELEKVLESRKKAEEIYKVIHTTYTNKKEERNNKTSLLDFLEPK
>Mature_232_residues
MLRIYADYREKNSGVPDIIKELGAIVIFDNLSVGDYVISDEIAIERKSVEDLVNSVFDKRFFDQLSRLSEAYAKPFILIE
GDMEKVRKITSRWKAINSALTSAILEFDLRVVYSNDRKESAEIIYKIAEKSSTSQNKKILNLHEKPKFESLRDMQLYVVE
AFPQIGSKLAERLLEKFGSIERICNASVSELEKVLESRKKAEEIYKVIHTTYTNKKEERNNKTSLLDFLEPK

Specific function: Unknown

COG id: COG1948

COG function: function code L; ERCC4-type nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI4885217, Length=225, Percent_Identity=28.4444444444444, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI74959747, Length=186, Percent_Identity=25.8064516129032, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6325235, Length=79, Percent_Identity=40.5063291139241, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17933560, Length=239, Percent_Identity=28.4518828451883, Blast_Score=95, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR020819
- InterPro:   IPR006166
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR011335
- InterPro:   IPR010994 [H]

Pfam domain/function: PF00270 DEAD; PF02732 ERCC4; PF00271 Helicase_C; PF00633 HHH [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 26840; Mature: 26840

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIYADYREKNSGVPDIIKELGAIVIFDNLSVGDYVISDEIAIERKSVEDLVNSVFDKR
CEEEEECHHHCCCCCHHHHHHCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
FFDQLSRLSEAYAKPFILIEGDMEKVRKITSRWKAINSALTSAILEFDLRVVYSNDRKES
HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHH
AEIIYKIAEKSSTSQNKKILNLHEKPKFESLRDMQLYVVEAFPQIGSKLAERLLEKFGSI
HHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERICNASVSELEKVLESRKKAEEIYKVIHTTYTNKKEERNNKTSLLDFLEPK
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MLRIYADYREKNSGVPDIIKELGAIVIFDNLSVGDYVISDEIAIERKSVEDLVNSVFDKR
CEEEEECHHHCCCCCHHHHHHCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHH
FFDQLSRLSEAYAKPFILIEGDMEKVRKITSRWKAINSALTSAILEFDLRVVYSNDRKES
HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHH
AEIIYKIAEKSSTSQNKKILNLHEKPKFESLRDMQLYVVEAFPQIGSKLAERLLEKFGSI
HHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERICNASVSELEKVLESRKKAEEIYKVIHTTYTNKKEERNNKTSLLDFLEPK
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]