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The map label for this gene is pcnB [H]

Identifier: 15920600

GI number: 15920600

Start: 408640

End: 409386

Strand: Reverse

Name: pcnB [H]

Synonym: ST0397

Alternate gene names: 15920600

Gene position: 409386-408640 (Counterclockwise)

Preceding gene: 15920601

Following gene: 15920593

Centisome position: 15.19

GC content: 32.26

Gene sequence:

>747_bases
ATGATTAAGGCTACATATTCAAGTGCGAAAGATTTTTACTCCTTGTTATCTGGTCTGCTTAAGGTTACAGATGAAATAAT
TTTAAACTTTACTGAAGACAGTATTTTTTCAAGATATCTGACAGATGATAAAGTACTCATGGTTATATTTAAAATTCCAA
AAGAATACCTAGAAGATTATACGATTGACAAACCACTTGGAATTAAAATTAATATAAATGATTTGAAGAAAATTCTTGGA
AAGGCTAAATCTAAAAGTGCAACAGTTACTTTAGAAGAGACTGAGGCTGGCCTAAAAGTTACTGTTAGAGATGAGAAAAC
AGGGACTAGAAGCAATATCTATATAAAAGGAGAAAAAACTTCAATAGACCAATTAACAGAACCTAAGGTAAACCTAAGTG
TTACATTTACAACTGATGGAGATGTATTAAAGGATATTGCTAGAGATTTAAGCTTAGTAGGTGAAGAGGTTGAAATATCT
GCAGATGAAAACACTGTTACCCTCTCCACAGAAGAGGCTGGTAGAACATACAAGTCTTTGCTAAAACAAGATAAGCCCCT
CAAATCCTTAAATGTAGAATCTCCATCGAAAGCAGTATATAGCATAGAAGTTCTAAAAGATGTATTTAAAGTAACTTCTA
TATCTCAAAATGTAACTGTAGGATTTGGAAATAACATACCTATGAAAATTGAAGTACCTACAGATTCTGGTGGTCAACTT
ATATTCTGGATAGCACCAAGACTATAG

Upstream 100 bases:

>100_bases
AAGAATTAGCCTCTCATTATTCTTCCTCTGATAAGAAGAAAAGGAAGAAAGTAGCAAAAAAGACTAAAAAAGTAAAAGAA
CAAAAAACAAATGAGGAAGA

Downstream 100 bases:

>100_bases
ATGCCATTATCCGAAGCTCTTTTAATTATTGCAACAAACTTATCGTTTGCCCTAAAAATTTCATCCCCTCTTATTAAAAC
TGGATATGTTTTATTACCTT

Product: proliferating cell nuclear antigen

Products: NA

Alternate protein names: Proliferating cell nuclear antigen homolog B; PCNA B [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILG
KAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKTSIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEIS
ADENTVTLSTEEAGRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQL
IFWIAPRL

Sequences:

>Translated_248_residues
MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILG
KAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKTSIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEIS
ADENTVTLSTEEAGRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQL
IFWIAPRL
>Mature_248_residues
MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILG
KAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKTSIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEIS
ADENTVTLSTEEAGRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQL
IFWIAPRL

Specific function: Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication [H]

COG id: COG0592

COG function: function code L; DNA polymerase sliding clamp subunit (PCNA homolog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PCNA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000730
- InterPro:   IPR022649
- InterPro:   IPR022648 [H]

Pfam domain/function: PF02747 PCNA_C; PF00705 PCNA_N [H]

EC number: NA

Molecular weight: Translated: 27542; Mature: 27542

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDY
CCCCCCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCEEEEEECCCHHHHHCC
TIDKPLGIKININDLKKILGKAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKT
CCCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCEEEEEECCC
SIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEISADENTVTLSTEEAGRTYKSL
CHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECHHHHHHHHHH
LKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQL
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCEE
IFWIAPRL
EEEEECCC
>Mature Secondary Structure
MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDY
CCCCCCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCEEEEEECCCHHHHHCC
TIDKPLGIKININDLKKILGKAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKT
CCCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCEEEEEECCC
SIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEISADENTVTLSTEEAGRTYKSL
CHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECHHHHHHHHHH
LKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQL
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCEE
IFWIAPRL
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11139078 [H]