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The map label for this gene is tfe

Identifier: 15920533

GI number: 15920533

Start: 353161

End: 353697

Strand: Direct

Name: tfe

Synonym: ST0334

Alternate gene names: 15920533

Gene position: 353161-353697 (Clockwise)

Preceding gene: 15920532

Following gene: 15920534

Centisome position: 13.11

GC content: 29.42

Gene sequence:

>537_bases
ATGAGTAGTAGGGCAGAAGAATTGATACTTAGCTTGGCAAAGGATCTAGTTGGTGAAGATGCAACAGAATTATTAAAGTT
TCTCTTAAGAAAGAGAATTGAAATGACAGATGATGATATAGCGAAAGAGCTTAATGTAAAAGTGAACGAAATTAGGAAAA
AGTTATATTTACTTTCTGAGCAAGGTTTTATAACCTATCGTAAAACAAGAGATAAAGAAACGGGTTTATTTATATATTAC
TGGAAAGTAAACATAGATCAGATAAATGAATTATTACTTAACAGAAAAAGATTAGTACTAGAAAAATTAAAGGCGAGATA
TGAGCAAGAGAAAGATTCTTTATATTATTATTGTCCTCAAGATAATATTCAATATAATTTTGATGAAGCATTAGAGAATG
AATTCAAATGTCCAAAATGTGGATCACCACTAGAATATTACGACTCAGAAAAGACTAAAAAATTCTTAGAGTATAAGATA
AAACAAATTGAAAACGAAATAGAAAGAGAGACACGACATGGCTCCAATAGTCGTTGA

Upstream 100 bases:

>100_bases
TTTCTGGATAGAATATATAAGGGTGGAGAACTAAATATACAATTTAGTGATGCAAAATTATCTATTATACCCCAAGAAAG
GGGGAAGAAGGTGAGGAAAA

Downstream 100 bases:

>100_bases
TCTTTTTTCTGGAGCTGGAGGATTTTCATTAGGATTTAAAAAATTAGGCTTTGATATTAGATTTGCAATAGATATTAATC
ATGCTGCCGCAAGAACTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MSSRAEELILSLAKDLVGEDATELLKFLLRKRIEMTDDDIAKELNVKVNEIRKKLYLLSEQGFITYRKTRDKETGLFIYY
WKVNIDQINELLLNRKRLVLEKLKARYEQEKDSLYYYCPQDNIQYNFDEALENEFKCPKCGSPLEYYDSEKTKKFLEYKI
KQIENEIERETRHGSNSR

Sequences:

>Translated_178_residues
MSSRAEELILSLAKDLVGEDATELLKFLLRKRIEMTDDDIAKELNVKVNEIRKKLYLLSEQGFITYRKTRDKETGLFIYY
WKVNIDQINELLLNRKRLVLEKLKARYEQEKDSLYYYCPQDNIQYNFDEALENEFKCPKCGSPLEYYDSEKTKKFLEYKI
KQIENEIERETRHGSNSR
>Mature_177_residues
SSRAEELILSLAKDLVGEDATELLKFLLRKRIEMTDDDIAKELNVKVNEIRKKLYLLSEQGFITYRKTRDKETGLFIYYW
KVNIDQINELLLNRKRLVLEKLKARYEQEKDSLYYYCPQDNIQYNFDEALENEFKCPKCGSPLEYYDSEKTKKFLEYKIK
QIENEIERETRHGSNSR

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TFE_SULTO (Q975T8)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376202.1
- ProteinModelPortal:   Q975T8
- SMR:   Q975T8
- GeneID:   1458248
- GenomeReviews:   BA000023_GR
- KEGG:   sto:ST0334
- NMPDR:   fig|273063.1.peg.370
- HOGENOM:   HBG508653
- OMA:   LFILYEN
- ProtClustDB:   CLSK802640
- BioCyc:   STOK273063:ST0334-MONOMER
- HAMAP:   MF_01909
- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF006373

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21417; Mature: 21286

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS51344 HTH_TFE_IIE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRAEELILSLAKDLVGEDATELLKFLLRKRIEMTDDDIAKELNVKVNEIRKKLYLLSE
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCC
QGFITYRKTRDKETGLFIYYWKVNIDQINELLLNRKRLVLEKLKARYEQEKDSLYYYCPQ
CCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
DNIQYNFDEALENEFKCPKCGSPLEYYDSEKTKKFLEYKIKQIENEIERETRHGSNSR
CCCCCCHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSRAEELILSLAKDLVGEDATELLKFLLRKRIEMTDDDIAKELNVKVNEIRKKLYLLSE
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCC
QGFITYRKTRDKETGLFIYYWKVNIDQINELLLNRKRLVLEKLKARYEQEKDSLYYYCPQ
CCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
DNIQYNFDEALENEFKCPKCGSPLEYYDSEKTKKFLEYKIKQIENEIERETRHGSNSR
CCCCCCHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479