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The map label for this gene is soxB [H]

Identifier: 15920403

GI number: 15920403

Start: 243745

End: 244848

Strand: Direct

Name: soxB [H]

Synonym: ST0221

Alternate gene names: 15920403

Gene position: 243745-244848 (Clockwise)

Preceding gene: 15920402

Following gene: 15920406

Centisome position: 9.05

GC content: 31.07

Gene sequence:

>1104_bases
ATGATAATAATAGTTGGAGCTGGAGCACATGGTCTTAGCTTAGCCTATCATTTAAAAAAGAAGGGTATTAAAGACGTACT
AATAATCGAAATGAAAAGAGTAGGATATGGTTCTAGTAGTAGAAATGCAAGTAGGTATCGTTATCATTTTTACAGTGAAG
AGAATATTGACTATGCATTAAAGGCAATACCTTATCTTATATCTCAAAGTAAAGAACTTTTCTTAAATTCTGTAACTTAT
AAAACAGGGTATTTGTGGATACTTAGAAGTGAAGAACAAATATCAATTTTCAAAAAATTAGACTCTTTATGGAAAAGTAA
GAATATAGGAGGAAGATTTATTAATTGTAAAGAATTCGATTATCTTTCCGTTGAAGGAGTATGTTATTATGCACCACAAG
ATGGTGCATTTCATCATGATTACATACTTTATAGTTATTATATTTCAGTAAAAGATTCGTATAAAATAGTTTTTGATAAA
GTTAGTGAAATTGTAATAGGAAGTGGCAAAGTTAAAGGTATAAAAACAGAATCTGGAAAATTCTTTGAATCTGAGAAAGT
TGTCTTAACAACTGGAGCCTGGAGCGGTGAACTACTACAAAAGATAAACATACAACCATATATTGAGCCAGAGAGAAAAG
AAATCTTTATTACTGAGCCCATAAAATACTTTATTAAGCCGCTTATTATAGATAAAGATATATATTTTTCTCAAACATTA
AAAGGAGAGATCATAGGAGGAACAGAAACTAAAACAGAAAGAGGATTTTTACCATTCACTATCTCGATTAAAGAGATGAG
TAAATTCTTACAAGGATTAAAGCAATTAGTAAAAAACGTATCTGGTCTAGGCATTTTACGTGGATGGAGTGGATATTATG
AGATGACACCCGATAATTCTCACATTATGGGATATGGGGAAGAATGGCCAGAAGACTTATATATTGATGCTGGATATAGC
GGACATGGCATGATGTTTGCTCCATATTCAGGTAAATTGATGGCTGATCTGATTGCTGATAACAAAAAGGACCCAGCATT
TTCAATTTTTACACCAGATAGGTTTGCAAAAAACAAATTACTAAAAGAAAATCTAGTAATATAA

Upstream 100 bases:

>100_bases
CGGGCCATTGTCAAGGTAAAGTATGTAGTATAGTTGCTGGAAGTATTTTAAAAAGTCCTACTCTAATAACTTTCAGATCA
CCTATTTATCCGGTGAGCTT

Downstream 100 bases:

>100_bases
ACTTCATTTATAACCTAGGTAATATAATAAAATCCTTTTTAGGAATATTTTTCCTTGCATATTCTACCAGATCTTTAGCA
TATTTACTTCTACTTCCATC

Product: hypothetical protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MIIIVGAGAHGLSLAYHLKKKGIKDVLIIEMKRVGYGSSSRNASRYRYHFYSEENIDYALKAIPYLISQSKELFLNSVTY
KTGYLWILRSEEQISIFKKLDSLWKSKNIGGRFINCKEFDYLSVEGVCYYAPQDGAFHHDYILYSYYISVKDSYKIVFDK
VSEIVIGSGKVKGIKTESGKFFESEKVVLTTGAWSGELLQKINIQPYIEPERKEIFITEPIKYFIKPLIIDKDIYFSQTL
KGEIIGGTETKTERGFLPFTISIKEMSKFLQGLKQLVKNVSGLGILRGWSGYYEMTPDNSHIMGYGEEWPEDLYIDAGYS
GHGMMFAPYSGKLMADLIADNKKDPAFSIFTPDRFAKNKLLKENLVI

Sequences:

>Translated_367_residues
MIIIVGAGAHGLSLAYHLKKKGIKDVLIIEMKRVGYGSSSRNASRYRYHFYSEENIDYALKAIPYLISQSKELFLNSVTY
KTGYLWILRSEEQISIFKKLDSLWKSKNIGGRFINCKEFDYLSVEGVCYYAPQDGAFHHDYILYSYYISVKDSYKIVFDK
VSEIVIGSGKVKGIKTESGKFFESEKVVLTTGAWSGELLQKINIQPYIEPERKEIFITEPIKYFIKPLIIDKDIYFSQTL
KGEIIGGTETKTERGFLPFTISIKEMSKFLQGLKQLVKNVSGLGILRGWSGYYEMTPDNSHIMGYGEEWPEDLYIDAGYS
GHGMMFAPYSGKLMADLIADNKKDPAFSIFTPDRFAKNKLLKENLVI
>Mature_367_residues
MIIIVGAGAHGLSLAYHLKKKGIKDVLIIEMKRVGYGSSSRNASRYRYHFYSEENIDYALKAIPYLISQSKELFLNSVTY
KTGYLWILRSEEQISIFKKLDSLWKSKNIGGRFINCKEFDYLSVEGVCYYAPQDGAFHHDYILYSYYISVKDSYKIVFDK
VSEIVIGSGKVKGIKTESGKFFESEKVVLTTGAWSGELLQKINIQPYIEPERKEIFITEPIKYFIKPLIIDKDIYFSQTL
KGEIIGGTETKTERGFLPFTISIKEMSKFLQGLKQLVKNVSGLGILRGWSGYYEMTPDNSHIMGYGEEWPEDLYIDAGYS
GHGMMFAPYSGKLMADLIADNKKDPAFSIFTPDRFAKNKLLKENLVI

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI194306651, Length=367, Percent_Identity=23.7057220708447, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 41922; Mature: 41922

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIVGAGAHGLSLAYHLKKKGIKDVLIIEMKRVGYGSSSRNASRYRYHFYSEENIDYAL
CEEEEECCCCHHHEEEHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHH
KAIPYLISQSKELFLNSVTYKTGYLWILRSEEQISIFKKLDSLWKSKNIGGRFINCKEFD
HHHHHHHCCCCHHEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
YLSVEGVCYYAPQDGAFHHDYILYSYYISVKDSYKIVFDKVSEIVIGSGKVKGIKTESGK
EEEECCEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEHHHHEEECCCCEEEEEECCCC
FFESEKVVLTTGAWSGELLQKINIQPYIEPERKEIFITEPIKYFIKPLIIDKDIYFSQTL
EECCCEEEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHEEECCCCEECCCC
KGEIIGGTETKTERGFLPFTISIKEMSKFLQGLKQLVKNVSGLGILRGWSGYYEMTPDNS
CCEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCC
HIMGYGEEWPEDLYIDAGYSGHGMMFAPYSGKLMADLIADNKKDPAFSIFTPDRFAKNKL
EEEECCCCCCCCEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHH
LKENLVI
HHHCCCC
>Mature Secondary Structure
MIIIVGAGAHGLSLAYHLKKKGIKDVLIIEMKRVGYGSSSRNASRYRYHFYSEENIDYAL
CEEEEECCCCHHHEEEHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHH
KAIPYLISQSKELFLNSVTYKTGYLWILRSEEQISIFKKLDSLWKSKNIGGRFINCKEFD
HHHHHHHCCCCHHEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
YLSVEGVCYYAPQDGAFHHDYILYSYYISVKDSYKIVFDKVSEIVIGSGKVKGIKTESGK
EEEECCEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEHHHHEEECCCCEEEEEECCCC
FFESEKVVLTTGAWSGELLQKINIQPYIEPERKEIFITEPIKYFIKPLIIDKDIYFSQTL
EECCCEEEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHEEECCCCEECCCC
KGEIIGGTETKTERGFLPFTISIKEMSKFLQGLKQLVKNVSGLGILRGWSGYYEMTPDNS
CCEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCC
HIMGYGEEWPEDLYIDAGYSGHGMMFAPYSGKLMADLIADNKKDPAFSIFTPDRFAKNKL
EEEECCCCCCCCEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHH
LKENLVI
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]