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The map label for this gene is 15893269

Identifier: 15893269

GI number: 15893269

Start: 1248762

End: 1249226

Strand: Reverse

Name: 15893269

Synonym: RC1346

Alternate gene names: NA

Gene position: 1249226-1248762 (Counterclockwise)

Preceding gene: 15893270

Following gene: 15893265

Centisome position: 98.46

GC content: 30.97

Gene sequence:

>465_bases
ATGCAGCAATTTAGTATTTATCAAACAAGCGATGAATTGCTTCTAAAATCGATATTGCTTCTGATAGAAAAATGCTATCA
CTCTGATCTTAAAAGCGTGATATTAACTGCAGATGCAGATCAACAAGAAATGCTCAATAAAAATCTTTGGACTTATTCAC
GTAAGCAATTTATACCTCACGGTAGTAAACTTGACCCGCAGCCTGAAAAACAGCCGATTTATATTACTGATGAGTTACAA
AATCCTAATAATGCTAGTGTGCTTGTTATTATTTCGCCTACAGATATAGGAAAAATTTTACAAGCAAAAGAGTATATAAG
AGTTTTCAAAAGGATAATTATAATAACTGATTTACCGGAAGATTTAAAAGAATTAACAGTTAAAATAAATAAATTTACCG
GACAGGAAAACAAAATAGATTGTTTTACTCAAAATCCTCGTGGAGCTTGGAATAAAGTAGTCTAA

Upstream 100 bases:

>100_bases
GACATGCAAGATTTAGGTTCTTGTGCCGTGAGGCGTGGGGGTTCAAGTCCCTTCATCCGTACCACTTAAATTTTCTCATA
AAAAATAACATAAAATTTTT

Downstream 100 bases:

>100_bases
TAAATTTATATTCTTTTACGTACAAATAAATATAATCCGATCGTTAAAGCAATAACCAAATTGAAATAACAAGCAAAAAT
AAAATCTAGATTTTTTGAAG

Product: DNA polymerase III subunit chi

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MQQFSIYQTSDELLLKSILLLIEKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQPEKQPIYITDELQ
NPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITDLPEDLKELTVKINKFTGQENKIDCFTQNPRGAWNKVV

Sequences:

>Translated_154_residues
MQQFSIYQTSDELLLKSILLLIEKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQPEKQPIYITDELQ
NPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITDLPEDLKELTVKINKFTGQENKIDCFTQNPRGAWNKVV
>Mature_154_residues
MQQFSIYQTSDELLLKSILLLIEKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQPEKQPIYITDELQ
NPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITDLPEDLKELTVKINKFTGQENKIDCFTQNPRGAWNKVV

Specific function: Unknown

COG id: COG2927

COG function: function code L; DNA polymerase III, chi subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007459 [H]

Pfam domain/function: PF04364 DNA_pol3_chi [H]

EC number: 2.7.7.7

Molecular weight: Translated: 17819; Mature: 17819

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQFSIYQTSDELLLKSILLLIEKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPH
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCHHHHHHHCCCC
GSKLDPQPEKQPIYITDELQNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITDLPE
CCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCH
DLKELTVKINKFTGQENKIDCFTQNPRGAWNKVV
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MQQFSIYQTSDELLLKSILLLIEKCYHSDLKSVILTADADQQEMLNKNLWTYSRKQFIPH
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHCCCHHHHHHHCCCC
GSKLDPQPEKQPIYITDELQNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITDLPE
CCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCH
DLKELTVKINKFTGQENKIDCFTQNPRGAWNKVV
HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]