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The map label for this gene is 15893232

Identifier: 15893232

GI number: 15893232

Start: 1213379

End: 1214218

Strand: Reverse

Name: 15893232

Synonym: RC1309

Alternate gene names: NA

Gene position: 1214218-1213379 (Counterclockwise)

Preceding gene: 15893238

Following gene: 15893231

Centisome position: 95.7

GC content: 34.52

Gene sequence:

>840_bases
ATGCCATTTAGTTCGTGTGGTACGGAATATTTTAACATATTTTATTTTAAGATAATGAATAATACGCTTAAATGGTTAAG
TGCAATCGGTGTTGAATATTATTGCCATGAACATCCACCGCAATTAAAGGTACGTAATAATACTGAACTAACTGAAAAGC
CACAAGTAAAACTTATGTCTACAAAAGAAACTGCATTCAATATGAATGATAAAGTTCATGATAATATAACCCTAGCAAGA
TCTCTTGCCGATAAAGCTAATAATATCGAAGAACTAAAAGAATCTCTACTAAATTTTAATGGTTGTGAACTTAAGAAATT
TGCTACTAATACGGTTTTCGGTGACGGTAATTTGGAAGCTAAAATTATGTTAATAGGTGAAGCCCCGGGAAGTACCGAAG
ATTTGAAAGGAATACCTTTTTACGGCGAAAGTGGCAATTTACTTGATAATATGCTACATGCTATCGGAATTTCACGAAAA
AATAACGCTTATATTACTAATACGGTATTTTGGCGTCCTCCTGCTAATAGACAGCCGACGTTCGAAGAAGTCGATATTTG
TAGACCTTTTGTCGAGAAGCATATTGCTCTTATTAACCCGCAGCTAATTATTCTAGTCGGTAGCACGGCTGCAACTAGCT
TACTTGGAAAAAATTCGGGTATTACTAAAATTAGACAAGAATATTATTTTTATACCAATAAATATCTATCCGCTCCTATT
CAAACTACGGCAATCTTCCACCCTGCCTATTTACTCCGCCAACCTATGCAAAAACGCACCTCTTGGTATGATTTACTCAA
GATTAAGGAGTATTTAGTCAATAATAGACTTCTTGCATAA

Upstream 100 bases:

>100_bases
AATTACATCATTAACTAGTACTTGCGAATCTTTAATAGCTTTTTGGATTTGATTCCTTGAAGCATTTTCAAGAAGCGATG
ATAGAGCTTTATCAAGCCTT

Downstream 100 bases:

>100_bases
CTTGTACATTAATCTAGTACTAACAGCTTCACGTACTTTTCAAAATAATTTTCTACTGGACAATTAGTCGTATATATGTA
ATCATCTCTAGTTAAGCTTA

Product: N-terminus of bacteriophage-type DNA polymerase

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase; Phage SPO1 DNA Polymerase-Like Protein; Uracil DNA Glycosylase Superfamily Protein; DNA Polymerase Bacteriophage-Type; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; Phage Spo1 DNA Polymerase-Related Protein; Phage DNA Polymerase; DNA Polymerase-Related Protein; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; DNA Polymerase Bacteriophage-Type Protein; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; N-Terminus Of Phage SPO1 DNA Polymerase

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MPFSSCGTEYFNIFYFKIMNNTLKWLSAIGVEYYCHEHPPQLKVRNNTELTEKPQVKLMSTKETAFNMNDKVHDNITLAR
SLADKANNIEELKESLLNFNGCELKKFATNTVFGDGNLEAKIMLIGEAPGSTEDLKGIPFYGESGNLLDNMLHAIGISRK
NNAYITNTVFWRPPANRQPTFEEVDICRPFVEKHIALINPQLIILVGSTAATSLLGKNSGITKIRQEYYFYTNKYLSAPI
QTTAIFHPAYLLRQPMQKRTSWYDLLKIKEYLVNNRLLA

Sequences:

>Translated_279_residues
MPFSSCGTEYFNIFYFKIMNNTLKWLSAIGVEYYCHEHPPQLKVRNNTELTEKPQVKLMSTKETAFNMNDKVHDNITLAR
SLADKANNIEELKESLLNFNGCELKKFATNTVFGDGNLEAKIMLIGEAPGSTEDLKGIPFYGESGNLLDNMLHAIGISRK
NNAYITNTVFWRPPANRQPTFEEVDICRPFVEKHIALINPQLIILVGSTAATSLLGKNSGITKIRQEYYFYTNKYLSAPI
QTTAIFHPAYLLRQPMQKRTSWYDLLKIKEYLVNNRLLA
>Mature_278_residues
PFSSCGTEYFNIFYFKIMNNTLKWLSAIGVEYYCHEHPPQLKVRNNTELTEKPQVKLMSTKETAFNMNDKVHDNITLARS
LADKANNIEELKESLLNFNGCELKKFATNTVFGDGNLEAKIMLIGEAPGSTEDLKGIPFYGESGNLLDNMLHAIGISRKN
NAYITNTVFWRPPANRQPTFEEVDICRPFVEKHIALINPQLIILVGSTAATSLLGKNSGITKIRQEYYFYTNKYLSAPIQ
TTAIFHPAYLLRQPMQKRTSWYDLLKIKEYLVNNRLLA

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 31859; Mature: 31728

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFSSCGTEYFNIFYFKIMNNTLKWLSAIGVEYYCHEHPPQLKVRNNTELTEKPQVKLMS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCEEECCCCCCCCCCCEEEEE
TKETAFNMNDKVHDNITLARSLADKANNIEELKESLLNFNGCELKKFATNTVFGDGNLEA
CCCHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHCCEEECCCCCEE
KIMLIGEAPGSTEDLKGIPFYGESGNLLDNMLHAIGISRKNNAYITNTVFWRPPANRQPT
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC
FEEVDICRPFVEKHIALINPQLIILVGSTAATSLLGKNSGITKIRQEYYFYTNKYLSAPI
HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHEHHEECCCC
QTTAIFHPAYLLRQPMQKRTSWYDLLKIKEYLVNNRLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PFSSCGTEYFNIFYFKIMNNTLKWLSAIGVEYYCHEHPPQLKVRNNTELTEKPQVKLMS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCEEECCCCCCCCCCCEEEEE
TKETAFNMNDKVHDNITLARSLADKANNIEELKESLLNFNGCELKKFATNTVFGDGNLEA
CCCHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHCCEEECCCCCEE
KIMLIGEAPGSTEDLKGIPFYGESGNLLDNMLHAIGISRKNNAYITNTVFWRPPANRQPT
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC
FEEVDICRPFVEKHIALINPQLIILVGSTAATSLLGKNSGITKIRQEYYFYTNKYLSAPI
HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHEHHEECCCC
QTTAIFHPAYLLRQPMQKRTSWYDLLKIKEYLVNNRLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA