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The map label for this gene is pal [H]

Identifier: 15893123

GI number: 15893123

Start: 1096487

End: 1096954

Strand: Reverse

Name: pal [H]

Synonym: RC1200

Alternate gene names: 15893123

Gene position: 1096954-1096487 (Counterclockwise)

Preceding gene: 15893125

Following gene: 15893122

Centisome position: 86.46

GC content: 36.32

Gene sequence:

>468_bases
ATGAAAACAAAAATTACATTAGCTTTTCTTGCATTATGTGTGCTTGCAGGGTGTAATACAACAAAAAGAGCACCGCAATT
TGACGGTAATATGAACCAAAGTGAAGAAACTTCATTAATGAAAGATTTCGAGAAGCATGCAGGAAATGCAGTATGGTTTG
CTTTTGATAGCTCTGCTTTATCACCAAAGGCTAAAGAAGAACTAGAGAGACAAGCTTGCTGGTTATCAAAGCATCCTGAA
GTAAAAGTTACTGTTGAAGGACATTGCGATGAAAGAGGTACCAAAGAATATAACTTAGGTTTAGGTGAAAGAAGAGCAGC
AGCAGCGAAAAAATTCTTAGCTCATAAAGGAATCGATCATAACAGATTAAATACAATCTCTTATGGTAAAGATAGACCTG
CTATGATGGGTAATACTGAAGAAGCTTTTGCCTATAATCGTAGAGCTGTAACAGTTGTACACCACTAA

Upstream 100 bases:

>100_bases
ATGATATATACTAACTCACATAGCTTTTGGTTAGTTTAGTTTTATGACTAGCTAAAATGAATTCAATATTAATAAATTAT
AATCTCAAGGAGTTTACATT

Downstream 100 bases:

>100_bases
AATTATTTACTAATTATAGTATCCTAAAAGGTCGAGTTTACTACTCGGCCTTTTTTTATTTATAACTTGATGTTATTATT
GCGAAAGCGTTGATGCGTGG

Product: peptidoglycan-associated lipoprotein precursor

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MKTKITLAFLALCVLAGCNTTKRAPQFDGNMNQSEETSLMKDFEKHAGNAVWFAFDSSALSPKAKEELERQACWLSKHPE
VKVTVEGHCDERGTKEYNLGLGERRAAAAKKFLAHKGIDHNRLNTISYGKDRPAMMGNTEEAFAYNRRAVTVVHH

Sequences:

>Translated_155_residues
MKTKITLAFLALCVLAGCNTTKRAPQFDGNMNQSEETSLMKDFEKHAGNAVWFAFDSSALSPKAKEELERQACWLSKHPE
VKVTVEGHCDERGTKEYNLGLGERRAAAAKKFLAHKGIDHNRLNTISYGKDRPAMMGNTEEAFAYNRRAVTVVHH
>Mature_155_residues
MKTKITLAFLALCVLAGCNTTKRAPQFDGNMNQSEETSLMKDFEKHAGNAVWFAFDSSALSPKAKEELERQACWLSKHPE
VKVTVEGHCDERGTKEYNLGLGERRAAAAKKFLAHKGIDHNRLNTISYGKDRPAMMGNTEEAFAYNRRAVTVVHH

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=138, Percent_Identity=42.0289855072464, Blast_Score=112, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17340; Mature: 17340

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKITLAFLALCVLAGCNTTKRAPQFDGNMNQSEETSLMKDFEKHAGNAVWFAFDSSAL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
SPKAKEELERQACWLSKHPEVKVTVEGHCDERGTKEYNLGLGERRAAAAKKFLAHKGIDH
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCC
NRLNTISYGKDRPAMMGNTEEAFAYNRRAVTVVHH
CCCCCCCCCCCCCCCCCCCHHHHEECCEEEEEEEC
>Mature Secondary Structure
MKTKITLAFLALCVLAGCNTTKRAPQFDGNMNQSEETSLMKDFEKHAGNAVWFAFDSSAL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
SPKAKEELERQACWLSKHPEVKVTVEGHCDERGTKEYNLGLGERRAAAAKKFLAHKGIDH
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCC
NRLNTISYGKDRPAMMGNTEEAFAYNRRAVTVVHH
CCCCCCCCCCCCCCCCCCCHHHHEECCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]