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The map label for this gene is 15893118

Identifier: 15893118

GI number: 15893118

Start: 1092292

End: 1092621

Strand: Reverse

Name: 15893118

Synonym: RC1195

Alternate gene names: NA

Gene position: 1092621-1092292 (Counterclockwise)

Preceding gene: 15893119

Following gene: 15893117

Centisome position: 86.12

GC content: 28.48

Gene sequence:

>330_bases
ATGAAATTGAGTAGGCTTTTCGATCCATGTAACAAGGCTGGTAATACTCGACTTTGTATATATCTATCCTTTATTTATTC
AGAGGTTATTAATATGGCACTTGCTACTAAAGTAAAAGAATTTTTAGAAGAAAAATTAAAACAAGAAAAGATAGATCGTA
AATATCTTGCCGAAGTCACTAATATCCCTTATACTACTGTTAGTAGAATTATGAGAGCGGAAGCTAATCGTGAATTCAAC
CCTGAAATAGATACTATTTTAAAAATAGCAAAATATTTTAATTGTACTATGGATGAGGTAATAAAAAGAAAAGTACAGAA
TAATTCATAA

Upstream 100 bases:

>100_bases
AAAATAACTTCAATATTGCTACAGAAGTTATATATTTGATAAAATAACCATATAAAAACTTGTTTTTATATGGTTTTACT
AGATTTTTGCTTACGCGGGA

Downstream 100 bases:

>100_bases
AGCTTGATACAAGCGAATTTTGCATGACTCGCCTGTACTCACTCACGTAGTTTACCTACCGCTTTCGCAGGCTTGCATTT
AAATTCATCTTGTCTAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MKLSRLFDPCNKAGNTRLCIYLSFIYSEVINMALATKVKEFLEEKLKQEKIDRKYLAEVTNIPYTTVSRIMRAEANREFN
PEIDTILKIAKYFNCTMDEVIKRKVQNNS

Sequences:

>Translated_109_residues
MKLSRLFDPCNKAGNTRLCIYLSFIYSEVINMALATKVKEFLEEKLKQEKIDRKYLAEVTNIPYTTVSRIMRAEANREFN
PEIDTILKIAKYFNCTMDEVIKRKVQNNS
>Mature_109_residues
MKLSRLFDPCNKAGNTRLCIYLSFIYSEVINMALATKVKEFLEEKLKQEKIDRKYLAEVTNIPYTTVSRIMRAEANREFN
PEIDTILKIAKYFNCTMDEVIKRKVQNNS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1195_RICCN (Q92GC8)

Other databases:

- EMBL:   AE006914
- PIR:   C97849
- RefSeq:   NP_360832.1
- ProteinModelPortal:   Q92GC8
- GeneID:   928348
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC1195
- NMPDR:   fig|272944.1.peg.1195
- OMA:   NMALATK
- ProtClustDB:   CLSK871067
- BioCyc:   RCON272944:RC1195-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 12804; Mature: 12804

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSRLFDPCNKAGNTRLCIYLSFIYSEVINMALATKVKEFLEEKLKQEKIDRKYLAEVT
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIPYTTVSRIMRAEANREFNPEIDTILKIAKYFNCTMDEVIKRKVQNNS
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKLSRLFDPCNKAGNTRLCIYLSFIYSEVINMALATKVKEFLEEKLKQEKIDRKYLAEVT
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIPYTTVSRIMRAEANREFNPEIDTILKIAKYFNCTMDEVIKRKVQNNS
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893