Click here to switch to the map view.

The map label for this gene is ycfH [C]

Identifier: 15892968

GI number: 15892968

Start: 969461

End: 970381

Strand: Reverse

Name: ycfH [C]

Synonym: RC1045

Alternate gene names: 15892968

Gene position: 970381-969461 (Counterclockwise)

Preceding gene: 15892969

Following gene: 15892967

Centisome position: 76.48

GC content: 35.18

Gene sequence:

>921_bases
ATGTTAATAGATTCACATTGTCATCTTAATTTACGTAGTAACTTGTCATTCCGCGACGTAGATACCGTAGTCAAACCATG
GTATGACGCAGTGTTTTTAGATTCTATCATTCAAAGAGCATTAGAAAATAATGTGCAGTATATGCAAACTATCTGCACTA
AAATTGAAGATTTACCTATTATTTTAGAGATAGCTGAAAAATATGCAAATGTTTTTGCGAGTGTTGGGGTGCATCCGTGT
GAAGTGAATTCTTTTATTAGTCATTGCGAAGCACTGCAAGTGCTGTGGCAATCTCAGGAAGCTTGGACAAGATTGCTACG
TCAAGACTACGTCTTTCCGAACTCATATGCTGAGGCAATTATTATGCTAACCCAGCATCCGAAAATTATCGGAATCGGTG
AAACGGGGCTTGATTATTATCATCAGCCTTACGATCAAAAATTACAAAAAGATTTGTTTGTAGCACATATACATGCGGCG
TCTAGTACACGCCTGCCTGTTATTGTTCATACAAGAGAAGCAGACGAAGATACTATTGACATTTTAACCTCAGAAATGCG
TAACAGCACATTTCCAGGTTTAATACATTGCTTTACCTCTTCAAAAAATCTAGCGGCAAAAATGCTAGATATCGGTTTAT
ATATTTCAATGTCAGGGATTATAACTTTCAAGAATGCTACTGATTTACAAGAAATAGTCAAATATATACCGCTTGATAGG
TTATTAATAGAAACCGACACTCCTTACTTAGCTCCTACGCCTATGCGAGGTAAACAAAACGAACCGGCATTTGTTAGGTA
TGTCGCTGAAAAAGTTGCCGAACTCAAAAATATAACATCAAAAGAAGTAGCAAATGTTACTACTCATAACTTCAAAACAT
TATTTTCTAAATTTGAAAAATATATAAATAATACTTTATAA

Upstream 100 bases:

>100_bases
GGTAGCAATATTTTAGAACCTACCATAATATTTCCAAAATTTGAATAGTGTGTCATACCGTGGCGAGACCGCAGTATGAC
ACACCTACTAAGAGTATAAT

Downstream 100 bases:

>100_bases
AAACAGCAAGTTTGATAATTTAAAGTTGAAATTTTTAAAATAATATGTATATTTTGTAGTATTTCGATTATTAGTATATT
TGATATGGAATTTAATCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLIDSHCHLNLRSNLSFRDVDTVVKPWYDAVFLDSIIQRALENNVQYMQTICTKIEDLPIILEIAEKYANVFASVGVHPC
EVNSFISHCEALQVLWQSQEAWTRLLRQDYVFPNSYAEAIIMLTQHPKIIGIGETGLDYYHQPYDQKLQKDLFVAHIHAA
SSTRLPVIVHTREADEDTIDILTSEMRNSTFPGLIHCFTSSKNLAAKMLDIGLYISMSGIITFKNATDLQEIVKYIPLDR
LLIETDTPYLAPTPMRGKQNEPAFVRYVAEKVAELKNITSKEVANVTTHNFKTLFSKFEKYINNTL

Sequences:

>Translated_306_residues
MLIDSHCHLNLRSNLSFRDVDTVVKPWYDAVFLDSIIQRALENNVQYMQTICTKIEDLPIILEIAEKYANVFASVGVHPC
EVNSFISHCEALQVLWQSQEAWTRLLRQDYVFPNSYAEAIIMLTQHPKIIGIGETGLDYYHQPYDQKLQKDLFVAHIHAA
SSTRLPVIVHTREADEDTIDILTSEMRNSTFPGLIHCFTSSKNLAAKMLDIGLYISMSGIITFKNATDLQEIVKYIPLDR
LLIETDTPYLAPTPMRGKQNEPAFVRYVAEKVAELKNITSKEVANVTTHNFKTLFSKFEKYINNTL
>Mature_306_residues
MLIDSHCHLNLRSNLSFRDVDTVVKPWYDAVFLDSIIQRALENNVQYMQTICTKIEDLPIILEIAEKYANVFASVGVHPC
EVNSFISHCEALQVLWQSQEAWTRLLRQDYVFPNSYAEAIIMLTQHPKIIGIGETGLDYYHQPYDQKLQKDLFVAHIHAA
SSTRLPVIVHTREADEDTIDILTSEMRNSTFPGLIHCFTSSKNLAAKMLDIGLYISMSGIITFKNATDLQEIVKYIPLDR
LLIETDTPYLAPTPMRGKQNEPAFVRYVAEKVAELKNITSKEVANVTTHNFKTLFSKFEKYINNTL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=302, Percent_Identity=27.4834437086093, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI110349734, Length=302, Percent_Identity=27.4834437086093, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061853, Length=307, Percent_Identity=27.0358306188925, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI14042943, Length=306, Percent_Identity=24.5098039215686, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI225903424, Length=172, Percent_Identity=30.2325581395349, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI226061614, Length=298, Percent_Identity=25.503355704698, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI225903439, Length=268, Percent_Identity=24.2537313432836, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI226061595, Length=261, Percent_Identity=25.2873563218391, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787342, Length=295, Percent_Identity=37.6271186440678, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI48994985, Length=269, Percent_Identity=27.5092936802974, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082439, Length=299, Percent_Identity=26.0869565217391, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17559024, Length=205, Percent_Identity=32.6829268292683, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17543026, Length=233, Percent_Identity=27.8969957081545, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=181, Percent_Identity=30.3867403314917, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=301, Percent_Identity=24.9169435215947, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24648690, Length=292, Percent_Identity=25, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24586117, Length=228, Percent_Identity=26.7543859649123, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI221330018, Length=226, Percent_Identity=27.4336283185841, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 34989; Mature: 34989

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDSHCHLNLRSNLSFRDVDTVVKPWYDAVFLDSIIQRALENNVQYMQTICTKIEDLPI
CEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHH
ILEIAEKYANVFASVGVHPCEVNSFISHCEALQVLWQSQEAWTRLLRQDYVFPNSYAEAI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHE
IMLTQHPKIIGIGETGLDYYHQPYDQKLQKDLFVAHIHAASSTRLPVIVHTREADEDTID
EEEECCCCEEEECCCCCHHHCCCHHHHHHHHHHHHEEECCCCCCCEEEEECCCCCCHHHH
ILTSEMRNSTFPGLIHCFTSSKNLAAKMLDIGLYISMSGIITFKNATDLQEIVKYIPLDR
HHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHEEEEECEEEECCCCCHHHHHHHCCCCC
LLIETDTPYLAPTPMRGKQNEPAFVRYVAEKVAELKNITSKEVANVTTHNFKTLFSKFEK
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
YINNTL
HHCCCC
>Mature Secondary Structure
MLIDSHCHLNLRSNLSFRDVDTVVKPWYDAVFLDSIIQRALENNVQYMQTICTKIEDLPI
CEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHH
ILEIAEKYANVFASVGVHPCEVNSFISHCEALQVLWQSQEAWTRLLRQDYVFPNSYAEAI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHE
IMLTQHPKIIGIGETGLDYYHQPYDQKLQKDLFVAHIHAASSTRLPVIVHTREADEDTID
EEEECCCCEEEECCCCCHHHCCCHHHHHHHHHHHHEEECCCCCCCEEEEECCCCCCHHHH
ILTSEMRNSTFPGLIHCFTSSKNLAAKMLDIGLYISMSGIITFKNATDLQEIVKYIPLDR
HHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHEEEEECEEEECCCCCHHHHHHHCCCCC
LLIETDTPYLAPTPMRGKQNEPAFVRYVAEKVAELKNITSKEVANVTTHNFKTLFSKFEK
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
YINNTL
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]